BAC Information

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BAC

Clone NameMSMg01-425I07
Chromosome13 (Build37)
Map Location 23,972,416 - 23,972,830
singlet/doubletsinglet
Overlap geneSlc17a1
Upstream geneV1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3
Downstream geneSlc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425I07.T7 (MSMg01no425_i07.b1)MSMg01-425I07.TJ (MSMg01no425_i07.g1)
ACCAG519182AG519183
length750751
length of high quality
(start - end)		503 (70 - 572)422 (70 - 491)
definitionCHROMAT_FILE: MSMg01no425_i07.b1 PHD_FILE: MSMg01no425_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:45 2005CHROMAT_FILE: MSMg01no425_i07.g1 PHD_FILE: MSMg01no425_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCAT
CAAGTAGTCCCTAGAAAGGGTGTTATCAGAGTCTGAGGGTGAAGGGAGAT
GTTTAGGAAAGATACAAAATTTCAATTAGAAGGAATAAGTTCAACAGATC
TGTTATACAACACAGTGACTATAGTTATTAACAGCAGTGCATTGTATGCT
TGAAAACTGCTACTATGGTAGATTTTAAGCATTCTCACCTCAAAAAAAAA
GGAACCATATGAGTAATATATATGTTACTTAGTTCCATTTAATCATTCTA
TAATGCATCACTTCAAAACCATGCTGTACGCAATAAATCCATGTAGTTTT
ATTTATTGACGCATAAATAAATAAATTTTAAGAGAGCCCTACCTGGGAGC
AATATCCAAGGCATTGATAAGTTGTCCGCAGTAGGAAAAGCTAAGTGTTG
AGTTGGCAAGTGTCAGGAAAATGACGGTGCTGTAGAAGTTGTAGCTCAGG
TAGAGCAAGCACATGATGAAGATCACGGGACAGAAACTCCCTGCAGAGAG
ATCCAGAGCATACAGGTAGGTGCTTCCTCATAGGGGGGCTGAAGGATTCC
CCAAGCCTTCGTCTGTCCTGGCTGTTCCTTACCTAGTGTGTTGAAAGAGT
TCCCGGACGGTATCTATGTTGAAAAACTTCCTGGGTCGGGAAAAAATCCG
AACTCTGACCTGTTAAGAAAACTCCTATTTTTCTTCTTCTCCAATGGGAG


TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTATAACCCCATGGGATAAGGAATAGTTGA
ACGTGCTCATCGTACTTTAAAAAAATTGGCTATATAATCTCATTCTTTAT
ATATTCAAAATAGTAACGGTTTAAGATAATAGTTTGGTATTTTGGAGAAT
GTGCATGTCAAATTGTAAAAAAAATTTGCTCTTGGTGTCCTCAGTTCCTC
CCTGTTTCCACATAATGGTGTTAATTCTTGAGGACCTATACTTAATCAAT
TGCTGCAAATGAATGCTCTTATTTCTGATTAATAAATAAATAAATTATGC
ACATGTGACTATTTTCAAGCATTCTAGTTACAACTGCTCTTTAAGAGAAA
CAATTGAAAGTGTAATTAGTCATTGCCCATGTTATATTAATACTGACTAT
AACAGTCAAGCATTTGAAATGTTTTGTCAGCAATTTATTAATTCTCAAAG
ACAGGGTATTGTGGAACTTTAAAAACTCTATCTTCTTTAAAAACCAAGAA
TGATTATCCCCCCATGCTCATTTATCTAAATCATATTTTATTTTTAAGAA
TTTTGAAATTTGGAAGTCTAAGAACTTACTTAATGTCTCATATATTCTTT
AAACTAACAATTATTTTTTCTTTGTTGGAACAAAGGGGCTCTTTTTTGTC
CCCGGCTGGTCCTTAACAAAAAGTTAAATTGGGGATAATAGGGGTGCCTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_i07.b1 MSMg01no425_i07.b1 CHROMAT_FILE:
MSMg01no425_i07.b1 PHD_FILE: MSMg01no425_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:45 2005
         (503 letters)



>mm_chr13_23971928_23972830
          Length = 903

 Score =  741 bits (383), Expect = 0.0
 Identities = 405/415 (97%), Gaps = 5/415 (1%)
 Strand = Plus / Minus

                                                                       
Query: 94  cagtgactatagttattaacagcagtgcattgtatgcttgaaaactgctactatggtaga 153
           |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 cagtgactgtagttattagcagcagtgcattgtatgcttgaaaactgctactatggtaga 844

                                                                       
Query: 154 ttttaagcattctcacctc-----aaaaaaaaaggaaccatatgagtaatatatatgtta 208
           |||||||||||||||||||     ||||||||||||||||||||||||||||||||||||
Sbjct: 843 ttttaagcattctcacctcaaaaaaaaaaaaaaggaaccatatgagtaatatatatgtta 784

                                                                       
Query: 209 cttagttccatttaatcattctataatgcatcacttcaaaaccatgctgtacgcaataaa 268
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 cttagttccatttaaccattctataatgcatcacttcaaaaccatgctgtacgcaataaa 724

                                                                       
Query: 269 tccatgtagttttatttattgacgcataaataaataaattttaagagagccctacctggg 328
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tccatgtagttttatttatcgacgcataaataaataaattttaagagagccctacctggg 664

                                                                       
Query: 329 agcaatatccaaggcattgataagttgtccgcagtaggaaaagctaagtgttgagttggc 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 agcaatatccaaggcattgataagttgtccgcagtaggaaaagctaagtgttgagttggc 604

                                                                       
Query: 389 aagtgtcaggaaaatgacggtgctgtagaagttgtagctcaggtagagcaagcacatgat 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aagtgtcaggaaaatgacggtgctgtagaagttgtagctcaggtagagcaagcacatgat 544

                                                                  
Query: 449 gaagatcacgggacagaaactccctgcagagagatccagagcatacaggtaggtg 503
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 543 gaagatcacgggacagaaactccctgcagagagacccagagcatacaggtaggtg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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