BAC Information

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BAC

Clone NameMSMg01-425P21
Chromosome13 (Build37)
Map Location 22,107,343 - 22,265,647
singlet/doubletdoublet
Overlap geneHist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8
Upstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16
Downstream geneLOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425P21.T7 (MSMg01no425_p21.b1)MSMg01-425P21.TJ (MSMg01no425_p21.g1)
ACCAG519542AG519543
length752747
length of high quality
(start - end)
394 (67 - 460)497 (64 - 560)
definitionCHROMAT_FILE: MSMg01no425_p21.b1 PHD_FILE: MSMg01no425_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:21 2005CHROMAT_FILE: MSMg01no425_p21.g1 PHD_FILE: MSMg01no425_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:22 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(22,265,256 - 22,265,647)(22,107,343 - 22,107,781)
sequence
GGCCGTTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCACTTT
TTAAAGACATTGACATGTGATTGTGATTGCTAAAGAAACTCTAATTTATG
CTGGGCATGCATGTTTTTACCCACTAGCCCTGTGTCTCTGACTCCAGTCC
CTGCATGAAGAGTTCTCAGCAGGCTTGACTCAGTTACCCCAATATAGAAA
TGTACAATATGACTTTCTATGTCTTATGATATGACAAAACTGCTATTTTG
GCTTCTGTAACTTGTTTATGCAGAGGCCTAAATATTGTTTTGACTTACTT
GACCCACTTACACTAGCAGCACAGACCATTATTGCTTGCTTATGTAGAGA
CTGAAGGTCTACTTGTGTCTTTTACATGAAAATAAAAACCTTTCGCATAC
CCTTCCCTCAGAACATACTTGAAATTATGCTTTCAGGCTGATATCATGTT
AACAAGTACTCAATAAATTTTTTAGTTACAGTGGAGACCCCAGATTCCTG
ACCGCTGTCCCAGGATAGTTCCCAGAGAGAAGAAGTCCAAAGTGGACTTG
ATAAGTCCCCAGAAACATAATTTACCACTGCCCTGAAGTTTGTAAATTAA
AAGCAAAAACAAATGTGTGTTCTGAAACTAGTTACTGATTTTGTTAAGTT
GTGGTTGTTTCGAAAACCCCGAATTTTGGTGTAACCATTGGCCCTATCTT
AACTCCATTTGTAGATTCCGGCCCCTGGGGACAGAACTCGTACCTCCATT
GG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGGCCAGACTGTTTTGAGTCTTTCAAATGACAGCAT
GGAGGCCTGAGAATAGAAACAAACCTGAAAATGACTGGAAGAAATCTGGA
GAAAGCTCACTTGCCACCGGCGCTCCTTAGTTTGGAAGTCTCTTTAAGCC
CTAAGTCTTGAAATGTCCTTTCGCTTTCCGGTGTCTGTTTCAGATGAGTT
TGTCTGCTCATCTTTGTGAATGAGTCACCCTCTCTACCAGGACAAAACAC
CTACGCTGCGTTTCTGCTGTCTTTTTCTTTGGCAGTCTTTGGTTTAAGAA
TAAAATTTCTGTGTAAGGTTTTAGAATTTGTAAAAACATAGCATGTTTCC
GCCCGGTTTCGAACCGGAGACCTTTCGCGTGTTAGGCGAATGTGATAACC
ACTACACTACGGAAACACCCACGCGATGTGCTTTGCTTTTCTAGGTTGAT
TAAAAATAGAGTCTACTATTTACATACCTTTGACCCTAATATTTACATAC
TTTAGATTTTTAAATTCCACAGCTTAAATGAAAGCCCCAAGACTAACCGT
GAAACAGATAAAGCTCCTATGCAGCTTCAATTCCTTCTACACGAACTCCA
GGCAGAGAAACTCAGGCCGACTCCCTGGCAAATTTTACTTAAGTGAAATT
TTTTACCCAATTGAAGGCTCCCTCCTTTCGTTTTGAAATGACCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_p21.b1 MSMg01no425_p21.b1 CHROMAT_FILE:
MSMg01no425_p21.b1 PHD_FILE: MSMg01no425_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:21 2005
         (394 letters)



>mm_chr13_22265056_22265849
          Length = 794

 Score =  750 bits (388), Expect = 0.0
 Identities = 391/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgattgtgattgctaaagaaactctaatttatgctgggcatgcatgtttttacccacta 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 592 gtgattgtgattgctaaagaaactctaatttatgctaggcatgcatgtttttacccacta 533

                                                                       
Query: 61  gccctgtgtctctgactccagtccctgcatgaagagttctcagcaggcttgactcagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gccctgtgtctctgactccagtccctgcatgaagagttctcagcaggcttgactcagtta 473

                                                                       
Query: 121 ccccaatatagaaatgtacaatatgactttctatgtcttatgatatgacaaaactgctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ccccaatatagaaatgtacaatatgactttctatgtcttatgatatgacaaaactgctat 413

                                                                       
Query: 181 tttggcttctgtaacttgtttatgcagaggcctaaatattgttttgacttacttgaccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tttggcttctgtaacttgtttatgcagaggcctaaatattgttttgacttacttgaccca 353

                                                                       
Query: 241 cttacactagcagcacagaccattattgcttgcttatgtagagactgaaggtctacttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cttacactagcagcacagaccattattgcttgcttatgtagagactgaaggtctacttgt 293

                                                                       
Query: 301 gtcttttacatgaaaataaaaacctttcgcatacccttccctcagaacatacttgaaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gtcttttacatgaaaataaaaacctttcgcatacccttccctcagaacatacttgaaatt 233

                                           
Query: 361 atgctttcaggctgatatcatgttaacaagta 392
           ||||||||||||||||||||||||||||||||
Sbjct: 232 atgctttcaggctgatatcatgttaacaagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no425_p21.g1 MSMg01no425_p21.g1 CHROMAT_FILE:
MSMg01no425_p21.g1 PHD_FILE: MSMg01no425_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:22 2005
         (497 letters)



>mm_chr13_22107143_22108039
          Length = 897

 Score =  758 bits (392), Expect = 0.0
 Identities = 431/452 (95%), Gaps = 13/452 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagactgttttgagtctttcaaatgacagcatggaggcctgagaatagaaacaaa 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 caggccagactgttttgagtctttcaaaagacagcatggaggcctgagaatagaaacaaa 260

                                                                       
Query: 61  cctgaaaatgactggaagaaatctggagaaagctcacttgccaccggcgctccttagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgaaaatgactggaagaaatctggagaaagctcacttgccaccggcgctccttagttt 320

                                                                       
Query: 121 ggaagtctctttaagccctaagtcttgaaatgtcctttcgctttccggtgtctgtttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagtctctttaagccctaagtcttgaaatgtcctttcgctttccggtgtctgtttcag 380

                                                                       
Query: 181 atgagtttgtctgctcatctttgtgaatgagtcaccctctctaccaggacaaaacaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgagtttgtctgctcatctttgtgaatgagtcaccctctctaccaggacaaaacaccta 440

                                                                       
Query: 241 cgctgcgtttctgctgtctttttctttggcagtctttggtttaagaataaaatttctgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  
Sbjct: 441 cgctgcgtttctgctgtctttttctttggcagtctttggtttaagaataaagtttctg-- 498

                                                                       
Query: 301 taaggttttagaatttgtaaaaacatagcatgtttccgcccggtttcgaaccggagacct 360
                      |||||||||||| ||| | |||||||||||||||||||||||| |||||
Sbjct: 499 -----------aatttgtaaaaatataacgtgtttccgcccggtttcgaaccggggacct 547

                                                                       
Query: 361 ttcgcgtgttaggcgaatgtgataaccactacactacggaaacacccacgcgatgtgctt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 548 ttcgcgtgttaggcgaatgtgataaccactacactacggaaacacccacgcggtgtgctt 607

                                           
Query: 421 tgcttttctaggttgattaaaaatagagtcta 452
           |||||||||||||| |||||||||||||||||
Sbjct: 608 tgcttttctaggttaattaaaaatagagtcta 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)