BAC Information

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BAC

Clone NameMSMg01-426B19
Chromosome13 (Build37)
Map Location 39,138,514 - 39,138,913
singlet/doubletsinglet
Overlap genenone
Upstream geneRiok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
Downstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426B19.T7 (MSMg01no426_b19.b1)MSMg01-426B19.TJ (MSMg01no426_b19.g1)
ACCAG519632AG519633
length785788
length of high quality
(start - end)		465 (45 - 509)468 (75 - 542)
definitionCHROMAT_FILE: MSMg01no426_b19.b1 PHD_FILE: MSMg01no426_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:31 2005CHROMAT_FILE: MSMg01no426_b19.g1 PHD_FILE: MSMg01no426_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTTGCTCTGAGCCCCATTTTTAAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGCTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCCTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAACCTTTCCCCTGTGCCCCTATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCAATTCACAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTTCAAGAATCAGTGA
CCATAAGTTGTGGGGGTTCCTTTTCGGGGCTTTCCATCCTATTCAATTGG
CCAACTGGGTTGTCTCTATACCAAAACATTGAGTTTTTATCCCCAATTTT
CCTGGGTAAAACTTTTCTGCTCGCTCGGTGGATTCTCCCCCATGTTTGTT
CTTCTTGTAAAAATATTTTTTATTCTACTGCTTTTTTCTTTTTATAGTAG
CTTTATATCGCCTTTCTTCCTTTTTCCACACACAG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAACCTGGGCTAATGAGAAACATTCT
TGAGAGGAGACGTTTGAGGAAAATAGAAGCTTGTAGTTTGGCACCATTCA
GAATTCTTTTCTGGCCAACAGAGACTTCTTCTGTGCTATTGATCCAAAGG
CTTCCAGTTTCAGCTCAGGAAAATGGTGTTCATATTTATCATGTGGCTAT
ATGAAAAACACTTAGTATAATGCCGTGGGACCGTGAAAGGTATCTTGGTT
CCCGGGTGAGCTAAGGCTTGAGGCCCCATAAACCCTGAAGGGACAGTAGG
CGCTTCGCCTGATTCCCAAGCACTAGCTTCATCCCCTCCCCATAGATTTG
TAGCCATCAGTCACATATGGACAATGTCCCAAGCCCCTCCACATATAGAG
GACATGACCTGTAATCACGTTCGTTCAAGACAGATCTCCATTTTAATGAG
GTACCTAAAGACCTGGAGGGCTTAGCCAATAAGCTTTCCTTCCCAGACAC
TCCTCCCTGCAAAAGGTATTTAACCTCACGCCCGCCCCTGAGAAGTGGGA
AATTGGTTTTACTCCTCCACCCTTTCCCCTGGAAAATAAAATGTCTTTAA
ACCCACAGGCTTTTCATTCTCTGGAACCCTCTCAAAATAAAAATGGGAAA
AAGCCTTTCTCCTATAAAAACCTGGTTAAATATTCCCTTAAAAAGATTTT
CCTTTTTTTTCCCCCCACCTGTCCCCACAATTCAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_b19.g1 MSMg01no426_b19.g1 CHROMAT_FILE:
MSMg01no426_b19.g1 PHD_FILE: MSMg01no426_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:31 2005
         (468 letters)



>mm_chr13_39138514_39139381
          Length = 868

 Score =  725 bits (375), Expect = 0.0
 Identities = 395/403 (98%), Gaps = 3/403 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacctgggctaatgagaaacattcttgagaggagacgtttgaggaaaatagaagcttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 taacctgggctaatgagaaacattcttgagaggagacgtttgaggaaaatagaagcttgt 341

                                                                       
Query: 61  agtttggcaccattcagaattcttttctggccaacagagacttcttctgtgctattgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agtttggcaccattcagaattcttttctggccaacagagacttcttctgtgctattgatc 281

                                                                       
Query: 121 caaaggcttccagtttcagctcaggaaaatggtgttcatatttatcatgtggctatatga 180
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 280 caaaggcttccagcttcagctcaggaaaatggtgttcatatttatcatgtggatatatga 221

                                                                       
Query: 181 aaaacacttagtataatgccgtgggaccgtgaaaggtatcttggttcccgggtgagctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aaaacacttagtataatgccgtgggaccgtgaaaggtatcttggttcccgggtgagctaa 161

                                                                       
Query: 241 ggcttgaggccccataaaccctgaagggacagtaggcgcttcgcctgattcccaagcact 300
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 160 ggcttgaggccccagaaaccctgaagggacagtaggcgctttgcctgattcccaagcact 101

                                                                       
Query: 301 agcttcatcccctccccatagatttgtagccatcagtcacatatggacaatgtcccaagc 360
           ||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 100 agcttcatcc---ccccatagatttgtggccatcagtcacatatggacaatgtcccaagc 44

                                                      
Query: 361 ccctccacatatagaggacatgacctgtaatcacgttcgttca 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  ccctccacatatagaggacatgacctgtaatcacgttcgttca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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