BAC Information

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BAC

Clone NameMSMg01-426J05
Chromosome13 (Build37)
Map Location 89,891,727 - 89,891,880
singlet/doubletsinglet
Overlap geneLOC100042940
Upstream geneEdil3, Hapln1, EG667266, Vcan
Downstream geneXrcc4, Tmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426J05.T7 (MSMg01no426_j05.b1)MSMg01-426J05.TJ (MSMg01no426_j05.g1)
ACCAG519983AG519984
length850774
length of high quality
(start - end)
170 (39 - 208)427 (73 - 499)
definitionCHROMAT_FILE: MSMg01no426_j05.b1 PHD_FILE: MSMg01no426_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:10 2005CHROMAT_FILE: MSMg01no426_j05.g1 PHD_FILE: MSMg01no426_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGCAGAGGATCCGCGGAATT
CACTTATGTACACTTCAAGCATATGAGAGCTTGCTGCATTTGACTTTGTA
TTTCTGGTCAACTTCAGTTGGTGTAAAACCCTGTAAGAGTATCTGTGTCC
TTATAAGTGGCATTATTATAAATGTATGTATATATATATATATATATATG
TGTGTGTGCANCCCCCTCCCCCTTCTTTCCTCTCTCTCCTCCCCCTTTCT
CTTTCTTTCCTTTTCCCTCCTCTCGCCTCCCGTGTCCCCTTCATTTTTTT
TTTCTTCTTTCCGGCTTCTTTTTTCTCTTCTTTGCGCCGTCTCCGCTTCT
TTTATTCCGTTCTTTTGTCTGCCCGTTCGTCCACTCGCCTTTTTTGTTAC
TCTTTTCTTTCTTTCCGTCCTCTTTTCTCGTTTCCTTCTCTTTCGCGTCT
CCTCTCGTTTTTCTTCCATTTTTTCTTTTCTCCCGTCTTTCTTCGCTTTA
TTTTCTTTCTTCTTTCTTCCTCTCCTCCTTCTACTCCTCTTCCTTCTTTC
TCTTATCCCTATTCACCTTCTTTTCTTTTCTTTCTTCCTTCCCCTTCTTT
TTTATTCTTCTCTCGCTCTCCTTCCTTTATCCCTCTTTTTCGTCNTTCTC
TCTCTTTCCCCTTCTCTTCGCTCTCCCTATATCCTCCTTCCTCCCCGTTT
CTTCCCTCCTCCTATCACTCCATACCTCCCACCTACCTTCCGTCCTCTTT
CGCTTCCCACCTTTTCTCTTTCTTTTTAAACTTCATCTTTTCCCTAATCT
TCACCTGCCCATCTTGCGAACTTCTTCATACTATTTCTACCTCTCCTACT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTACGTGTTATCTAAGCAACAGAGCCT
TGCTATCAGTTTGTGGATAGCAACCAACAATCTTGGCAAAAGTGTGAGTT
GATTGGGATTTCCCCTGGAACCCCTTTGGCTAACTTGTCAGTTTTATGTA
ATCCATTTTTAGAAGTATAGGTTTGATTGGTGACTAGAGATGTCTAGGTG
GGGCACTGTCTCCGGGTTGCTGATGCCATTTAGATGACCTTCATATATGT
ATGTATACATTATAGGAATTTTCTACTACATTCCCTTCGTATGGCCCTTA
GTTCAGTTCTCCTTCCCTATACTCCCTATATGCTCCCCACTTTAATCCTA
CATTTTAGCCACCACCATCCATCCATAACTGTCTATTCTATTTCCCTTTC
CTGGACAGACAGAATCCTCCCATCTATTCCCTTATTCGATATCTATTACA
TAAGAATATCTAAGAAAAGGGTTACACTTCCTAAGTAGAGAAGCATTTGT
GGTGTTAAGTGAAGAAGACTTATAATTGGCTTTATCTTAGTATCTTTCCT
AATACTGGTATCAGATGTCCTGACCCACTTTAATTCTTAAGGTCTTTTAC
TGGCTTGGCTACCAGCTTCAACAAATCCTTCTGTTGGATCTCAACTTGGA
TGGGCATATTCGAATTGCAACTTCCCCCCCTCCTGCGTTCGTTGCTCCTG
CACCCATTCCTTTCTCATGCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_j05.b1 MSMg01no426_j05.b1 CHROMAT_FILE:
MSMg01no426_j05.b1 PHD_FILE: MSMg01no426_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:10 2005
         (170 letters)



>mm_chr13_89891520_89892089
          Length = 570

 Score =  267 bits (138), Expect = 3e-76
 Identities = 151/156 (96%), Gaps = 2/156 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcacttatgtacacttcaagcatatgagagcttgctgcatttgactttgtatttct 67
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcacttatgtagacttcaagcatatgagagcttgctgcatttgactttgtatttct 267

                                                                       
Query: 68  ggtcaacttcagttggtgtaaaaccctgtaagagtatctgtgtccttataagtggcatta 127
           ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 268 ggtcaacttcaattggtgtaaaaccctgtaagcgtatctgtgtccttataagtggcatta 327

                                               
Query: 128 ttataaatgtatgtatatatatatatatatatatgt 163
           ||||||||||||  ||||||||||||||||||||||
Sbjct: 328 ttataaatgtat--atatatatatatatatatatgt 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)