BAC Information

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BAC

Clone NameMSMg01-427P11
Chromosome13 (Build37)
Map Location 49,909,009 - 49,909,514
singlet/doubletsinglet
Overlap geneEG638833
Upstream genePhf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357
Downstream geneGm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427P11.T7 (MSMg01no427_p11.b1)MSMg01-427P11.TJ (MSMg01no427_p11.g1)
ACCAG521041AG521042
length741777
length of high quality
(start - end)		578 (52 - 629)307 (83 - 389)
definitionCHROMAT_FILE: MSMg01no427_p11.b1 PHD_FILE: MSMg01no427_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:59 2005CHROMAT_FILE: MSMg01no427_p11.g1 PHD_FILE: MSMg01no427_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTAGATTTATCCATAAAAAGTCAGCACCTCCTTATGGAGT
TCAACATCCTGAATTTTCAGAATTTTCCTCTTTATGGACAGAGTCACTCT
AAAACAGTTTTAGTTCATAGACCTGGTAACTTAACCCCCAGACATCCCAT
ATACGATTTCTCCTTTGTTCTACTTGAAAATACTTTCACCTACTTTTTGA
ATCAAGTCTTCAATTTCTTGTTAAACTTTATAGATCTCCTCAGTTCTGCT
TCCAGATCTCCAGTCATTATTATACTCTTTTTTCTTTTCTTATTAAATAT
TGTTGAAATATTCATTCTAAAGTATCGAGTTCTTGCTTAATGGATGCATC
ATTTTCTCTCATCTCTCTGAGGACTTTAAAGGGGTTATATAGTAGGACAC
TATCAAATAGGTATAAATCTGGGTAGTGAACAGTCATTTGTTTCCAAACA
TCTGTAAAAACAGACTCCAGTGTCAGAAGTTTATTAATTACTAGATGCAT
AGCTGAGGTTAATTGAAAGGTGATCTTGTTATATTTTTGACTGAACAGAA
ATCTGATTATTTTTTCATAAGGACTCAGAGTTTTTAAATCAGTGTTGGTG
GATACTGGGGGAAACTGCAGTTGGGGTGTACTGTATGAAAGAATATTGAA
TAAATGGATGAATGAACTCATTGATTTAAAATATTTTAGAT

NNNTTACTACGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGACTCTTCAGAGAG
TGTATATGCTAGGGCCCCAAGAGAGAGGGTAGGTTAGTGGCTTGTGGCTA
TTGGTTGCTGATAGCTGTGGTTAAGTATTCAGTGCACAGTGAAGAAACCA
GAAAAAATTAGATATCCTGATAGCAAAGATCAAAGTTGCCTCAAGGAACT
TGACTCCCCAATCAGGAGGAAGTAGTCTAACCGTAACATCAACCATCTCC
CCTTCTATCCTTTTTTCTCTCCTATGTAGTGTTAGGGGGTCGAAAGGGTG
GAAGAGGAGGCTGGGTGAAAGGGAGAAGGGTGGAAGAGGAAAAGANNNNA
TNTGGTNAAAAAGGATGTGAATANATTGGTTTGTTTTTTATATTAGAATG
TAAAATTGTGAATATAAAAATTTTCCTAAATTGTGGGTGATTGTGTTATA
TTTTTTTTTTATTTTAATTTATTATTTATATTTTATTTTGTTATATATGA
ATGATGATTATAGAGTTACTTTTTCTCTTCTATTTTTTTTTTCTTTTTTT
TTCTTTCTTTTTCCTCTTCCCTTCTTTTTTTTCTTTTATTCTTTTTCTTT
CTTCTCTTAATGTCGACCGGGGGCTTTCTTTATTTGTTTTTTTTGTTTTT
TATTCTTGCCATTAATCCTCTTCCTCTTGCCTCTTTTTTTTTCTCTTTTT
TCGCTTTTATCTCTCTTTACTTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_p11.b1 MSMg01no427_p11.b1 CHROMAT_FILE:
MSMg01no427_p11.b1 PHD_FILE: MSMg01no427_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:59 2005
         (578 letters)



>mm_chr13_49909009_49909987
          Length = 979

 Score =  940 bits (486), Expect = 0.0
 Identities = 501/506 (99%), Gaps = 1/506 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagatttat-ccataaaaagtcagcacctccttatggagttcaacatcctgaat 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaattctagatttatatcataaaaagtcagcacctccttatggagttcaacatcctgaat 447

                                                                       
Query: 64  tttcagaattttcctctttatggacagagtcactctaaaacagttttagttcatagacct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tttcagaattttcctctttatggacagagtcactctaaaacagttttagttcatagacct 387

                                                                       
Query: 124 ggtaacttaacccccagacatcccatatacgatttctcctttgttctacttgaaaatact 183
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggaaacttaacccccagacatcccatatacgatttctcctttgttctacttgaaaatact 327

                                                                       
Query: 184 ttcacctactttttgaatcaagtcttcaatttcttgttaaactttatagatctcctcagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttcacctactttttgaatcaagtcttcaatttcttgttaaactttatagatctcctcagt 267

                                                                       
Query: 244 tctgcttccagatctccagtcattattatactcttttttcttttcttattaaatattgtt 303
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 266 tctgcttccagatctccagtcatgattatactcatttttcttttcttattaaatattgtt 207

                                                                       
Query: 304 gaaatattcattctaaagtatcgagttcttgcttaatggatgcatcattttctctcatct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaaatattcattctaaagtatcgagttcttgcttaatggatgcatcattttctctcatct 147

                                                                       
Query: 364 ctctgaggactttaaaggggttatatagtaggacactatcaaataggtataaatctgggt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ctctgaggactttaaaggggttatatagtaggacactatcaaataggtataaatctgggt 87

                                                                       
Query: 424 agtgaacagtcatttgtttccaaacatctgtaaaaacagactccagtgtcagaagtttat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  agtgaacagtcatttgtttccaaacatctgtaaaaacagactccagtgtcagaagtttat 27

                                     
Query: 484 taattactagatgcatagctgaggtt 509
           ||||||||||||||||||||||||||
Sbjct: 26  taattactagatgcatagctgaggtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space:   550392
Effective search space used:   550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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