BAC Information

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BAC

Clone NameMSMg01-428J02
Chromosome13 (Build37)
Map Location 19,337,119 - 19,337,619
singlet/doubletsinglet
Overlap geneLOC624071
Upstream genePou6f2, Vps41, Amph, LOC624044, Tcrg-V4
Downstream geneTcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730, Elmo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428J02.T7 (MSMg01no428_j02.b1)MSMg01-428J02.TJ (MSMg01no428_j02.g1)
ACCAG521503AG521504
length960746
length of high quality
(start - end)
---518 (81 - 598)
definitionCHROMAT_FILE: MSMg01no428_j02.b1 PHD_FILE: MSMg01no428_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:47 2005CHROMAT_FILE: MSMg01no428_j02.g1 PHD_FILE: MSMg01no428_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGGCATTCGGTTGTCGTGTCTTTCCCTCCGGGGCGCCACCTCCAAAAACC
ATTGAACACACCTCGACAAGGCCCCCCGGGCTCGTATACGAGTCTCTTCC
CTTGTCACAAACTTTTTTTGTCAGCTTCTACCCGCGATCCCACGTCATTA
CACCACCTCCCTCTCCCCCCGTTCTTATCTTGATTACCATCCTTCCCGTG
GCCTCGCCTCTTAGTAGACAACCATATATATAACGATCGCTCCCCTATCT
CACTTCAGCCCTCCCGTTCTTTCGCCACAAATTTCTACTCAGTAGGCTGA
TATACCATGCCAACCATAAGATGCTACTATACGTCCTATTTACCTTCATT
AGGGATCTGTTGGTTATGCCACCCGTNCTTCAATATTTTATTTTCAAAAC
ATTTCAAGTTTTCCGAGTGGCATATCAGCCTACTCATAGAGCGCCCATAC
CCCTTATTCGCCACCCGACGGGCTATTGCTACCTTTCCAAAAATGATTAG
TTAGTAAATAAAGATAAGCAACCATTTTTGCACCACCCACACACACTTAT
CTAACCTCACACCCCACTATTCATGACCTCCAAAAACCTAGTATCCAACG
ACCAAACGCGAATTCGCAGATGAACATCCCATTGGCCAACTTACCCACCC
TATGCCATAGCCGACGAAATTATAAACCGTGTTAACGACAATCACCGTAA
TTAAAGAGACAATAAACAATACCCAATAGAAAACGCCGCATCCCACGACG
ACAGAGCCCCACCATAAAGAGTAATATCCAAAATCTACGCCCCCCGCAAT
ACGTACGACTCGCGTCACGTTTCAACCGGTGTTGTTCAATACACACCTGC
GTCCGGAGGCCGCCCCTGTAACCCCTGACCGCGCCCCCATGCTTTCTAAC
CCTTCTTCCCCCCGCCCCCCCTTTATCTTTTCTCCCACCCCCCCTATTTT
TATAATTCGC
NGGGCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCATTCTCCTACCTCTT
AACTTATAGATTTGCTCGTTCGTATGTCCCAGGGACTCAGATGTTGCATC
CCTGTGCTTCTTAAGATTTACTATGCTTTGACTGAGTGATCCGACTTCTC
TAGCTTGTCTCCAATCACTGGTATCCTAATGTGCCCATGATTATTCTACT
GATGAGACTTTCCACTTAGTTTTTTATTTGATTTATGAAGTTTTTACTTC
AAGCATCATTTTAGCGTGACTTTCTCCCATATCTCTATATTTGGTTCAAT
TCTATTTTCATATTCTCAATTGTCTTTGATATTTCATTTGCTTCTTCTCT
CTGAGCATTCATCCAGGCATTTTATTCTTATCCTCTTTGCATCCATCTGG
AAGTGAGTTCATGTTCTCTTTGAAATATTTGTATTTTCATGGAAAATATC
TATAATTTTAAAAGTATTTTTTCTGAAGATTTGTTTAAATTACTCTCACT
GGGGATTACATGTTTAGTAATTTAGGAGGAAACATAGTCTGTGATTGTGA
TAGAGCTCATGTTTTAAGATTGGTCTTGCCACGTGGAGGCAATTTGCTGG
TTTGGTCTTTGGTGTGAGTTTCTCACCTACTTTTTCTGACCGAGTGGCTT
GAAATCTCCCTGTTGTTCTCTGGCTTTAACAATTGCCTTCCCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_j02.g1 MSMg01no428_j02.g1 CHROMAT_FILE:
MSMg01no428_j02.g1 PHD_FILE: MSMg01no428_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:47 2005
         (518 letters)



>mm_chr13_19336904_19337821
          Length = 918

 Score =  748 bits (387), Expect = 0.0
 Identities = 480/519 (92%), Gaps = 19/519 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcattctcctacctcttaacttatagatttgctcgttcgtatgtcccagggactcag 60
           ||||||||||||||||||||||||||||||||||||| ||  | | |         |   
Sbjct: 216 tcctcattctcctacctcttaacttatagatttgctcttt--tcttt---------t--- 261

                                                                       
Query: 61  atgttgcatccctgtgcttcttaagatttactatgctttgactgagtgatccgacttctc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 -tgttgcatccctgtgcttcttaagatttactatgctttgactgagtgatccgacttctc 320

                                                                       
Query: 121 tagcttgtctccaatcactggtatcctaatgtgcccatgattattctactgatgagactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcttgtctccaatcactggtatcctaatgtgcccatgattattctactgatgagactt 380

                                                                       
Query: 181 tccacttagttttttatttgatttatgaagtttttacttcaagcatcattttagcgtgac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tccacttagttttttatttgatttatgaagtttttacttcaagcatcattttagtgtgac 440

                                                                       
Query: 241 tttctcccatatctctatatttggttcaattctattttcatattctcaattgtctttgat 300
           ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ttt-tcc-atatctctatatttggttcaattctattttcatattctcaattgcctttgat 498

                                                                       
Query: 301 atttcatttgcttcttctctctgagcattcatccaggcattttattcttatcctctttgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 499 atttcatttgcttcttctctctgagcattcatccaggcattttattcttatactctctgc 558

                                                                       
Query: 361 atccatctggaagtgagttcatgttctctttgaaa-tatttgtattttcatggaaaatat 419
           |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 559 atccatctggaaatgagttcatgttctctttgaaaatatttgtattttcctggaaaatat 618

                                                                       
Query: 420 ctataattttaaaagtattttttctgaagatttgtttaaattactctcactggggattac 479
           ||||||||| |||| ||||||  |||||| ||||| |||||| |||| ||||||||||||
Sbjct: 619 ctataatttaaaaaatattttc-ctgaagttttgtctaaattgctctaactggggattac 677

                                                  
Query: 480 atgtttagtaatttaggaggaaacatagtctgtgattgt 518
           || ||||||| ||||| |||||| |||||||||||||||
Sbjct: 678 atttttagtactttagaaggaaaaatagtctgtgattgt 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)