BAC Information

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BAC

Clone NameMSMg01-428N12
Chromosome13 (Build37)
Map Location 15,422,516 - 15,422,803
singlet/doubletsinglet
Overlap genenone
Upstream geneHecw1, Mrpl32, Psma2, AW209491, EG665099, LOC670994
Downstream geneEG625121, Gli3, LOC665157, Inhba, LOC625181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428N12.T7 (MSMg01no428_n12.b1)MSMg01-428N12.TJ (MSMg01no428_n12.g1)
ACCAG521714AG521715
length755753
length of high quality
(start - end)
236 (75 - 310)288 (321 - 608)
definitionCHROMAT_FILE: MSMg01no428_n12.b1 PHD_FILE: MSMg01no428_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:08 2005CHROMAT_FILE: MSMg01no428_n12.g1 PHD_FILE: MSMg01no428_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAAAATTTGCGGCCGGTAAANGAATCAAATTCANTACCGGAGGCGNGG
AATTCCAAGCTTACAAACATCTCAAGGACTACCTAGGGCATTGGTGAAGG
CCAGGAAACAAAGTTCGATTTTGCTTAGGTATTTGGCAAGTCATTGCTTT
GAGACACCTATAATAAAACAATAATGAGGGAAAGCACATAGATCCATTCA
CCAACTAAAGCAAGGATATTATTGGAGCATTCGTTATACAAGATGCTTTT
GTTCCAGGAGAGTAAGTTTCTGTGACCTTTTCATCTCGGGACTGCATCCA
GGTTTCTAGGCCTTTCTANTTTGTCACTACTGGAGNGGANGNAGCACCCA
AGATGTTCTGATGCCCACGAAAAATCCTCCCCAGTTAATTTTTTCTCAAA
ATCTTGATCCTCCATATCTATAGGCTCTGATCCACAAGTCTTTCTTAGCA
TCTCCCTACATAACTGTCATTTGTGCTTAGACATTTGATGCCCAAGCCAA
TACTGCAAATCCTGTATCCTAGTCACTGTATCTAAAGGATCAGACAGCAC
AGGAACCAGATCCTTTCTCCGAGACAGAGCCATGAGCATCTAGGCCCGCG
GTTCTCAATCCTCCTAACCCTGCCATACAGTTAAAAAGGTCTTTCTTTTT
ATGACCCCCCCCACTAAACATATGTTGTCGCTAATTCCCAAATCTTAAAT
CTTGTTTACTGCCCACGGATTTTCAATGGCCCACCTTCCCGCTATTATTC
GTCTC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTGCCTCTCAGATCCCTGAAATCGAC
CAATATGGTCAGAGTCTCTTTGTTTAGGATTGCCTTTACTCATTGTCTTC
ACCAAGCCAGCAGTGAATATTAGTTATGTTCCTAGTGCTGGCTTCTCAAT
TGGGATCAATCTCTGAGGACACGTAATGACATAGAAGACTATGTTTCTGA
AATGGAACAATAGAGGCTATATATTGTGTCTGGATTTGAATTCTCTTTTC
TGTCCCAGCCCTTGATAATACATTTGCTGATTTCTTAGAAATTGCTTTAA
TTTCTAGTGTCCATTGCTTGGAATTGAGTAGCTTGCATTAGGACTCTGGA
CATAACAATTACCTTAGTTACTATATGCCTTTCCAATTCTATAGAATCCT
ATCTTTGACTGCAATATTCAGGTACCTATGATTATCTCCAGATTTACAAA
CAGTCTTGATGGGCAGGCACAGTTTCCAGATGAGTCTGTTAATGACATGC
TGCCAACTCTCTAATTTGGGTATTTTCTAACTTCTTGACAATGTCTGTTT
TAAATCCTAGTCAAAATGACAGTCCTAGAAACCAAACTAACCTGTTATTA
GGATAAAAAAATATTGCTTACCAGTTCCTTGTCTATAAACAACAAAACAG
CGCTCTTCCCAAATAGTTAAACCTTCTTTGTATTGAACACCACATATTAT
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_n12.g1 MSMg01no428_n12.g1 CHROMAT_FILE:
MSMg01no428_n12.g1 PHD_FILE: MSMg01no428_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:08 2005
         (288 letters)



>mm_chr13_15422316_15423003
          Length = 688

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttgctgatttcttagaaattgctttaatttctagtgtccattgcttggaattgagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 catttgctgatttcttagaaattgctttaatttctagtgtccattgcttggaattgagta 429

                                                                       
Query: 61  gcttgcattaggactctggacataacaattaccttagttactatatgcctttccaattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcttgcattaggactctggacataacaattaccttagttactatatgcctttccaattct 369

                                                                       
Query: 121 atagaatcctatctttgactgcaatattcaggtacctatgattatctccagatttacaaa 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 368 atagaatcctatctttgactgcaatattcaggtacccatgattatctccagatttacaaa 309

                                                                       
Query: 181 cagtcttgatgggcaggcacagtttccagatgagtctgttaatgacatgctgccaactct 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cagtcttgacgggcaggcacagtttccagatgagtctgttaatgacatgctgccaactct 249

                                                           
Query: 241 ctaatttgggtattttctaacttcttgacaatgtctgttttaaatcct 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctaatttgggtattttctaacttcttgacaatgtctgttttaaatcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)