BAC Information

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BAC

Clone NameMSMg01-429A02
Chromosome13 (Build37)
Map Location 10,408,978 - 10,409,573
singlet/doubletsinglet
Overlap genenone
Upstream geneDip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
Downstream geneLOC100039648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429A02.T7 (MSMg01no429_a02.b1)MSMg01-429A02.TJ (MSMg01no429_a02.g1)
ACCAG521838AG521839
length741717
length of high quality
(start - end)
613 (25 - 637)384 (76 - 459)
definitionCHROMAT_FILE: MSMg01no429_a02.b1 PHD_FILE: MSMg01no429_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:21 2005CHROMAT_FILE: MSMg01no429_a02.g1 PHD_FILE: MSMg01no429_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCAATC
CTGATCCTAGCAGCAAGAGCAGCAAGCACCAAAGTAGAGCAAAAAACAAA
AATAAACCAAGGTTCTGTATGGCCAAATAAATAAGTATTCTGAGAAACTA
GGAAGGCAGCCCTGGGAATTGGGTTCAGAATTTGGTCCTGACTCCCTGTC
TGGATGTATTTTTATCAAACTGACATCCTGACAGTCAGGATGAATGAAAG
ATTCCCCAAAGTGAACATCATGGAAGGAAGAAGGCAGGAGGCTTGACTAT
GTGGAATGCATATACTCTGAGAGAGAAAAGTAAGTCAGAAGCAGAAAAAT
CAAAAAGCTATCCAGGGACTTGCAAATGGAAGCTCTGAGTTACAGCTCAT
GGCCACAGAGGGAACAGGACATTTATGATGCTCACTAGACAGAGCTCAGG
AGAAGGGTGGCAAGCAGGAGCTGTTGGATTGGATAATGACAGATACTAAT
CAATTGGAAAGCCAAACATGAAATCTAGGATCTGATACCTAGTTGAAAAA
GATTGTAATGGAATGAGAAAATAAAGTCAATATTTTAAAAATTATTTGAA
AACCAGAAAGGCATTCATTATTTTATCCTTTGCAGAATAGTTCAATCATG
GGGAGACAGGAGATCAGGTAGTGAGGGGGTTCACATTAGCTAAATGTGGA
GAGCCCTGCAAATGGGCATGTTTAATCCTACCTGGGAGGGA
CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTGGCTGAAGCCAGCATTTGC
TGAAACACCATCTCTGTATGGTTGCTGGGGTTGGGTGGTGGGGCTGGGAA
GGAGATGCTGCTACTGAGGTGCTACTGTGGACAGCTCCTGTGGGAAAGCT
CCTGCAGTGATGCTTCAAGAAAGCTGTAGGCTGAGGCAGGAAAGAGGGAC
TTACCACCACGGATATCTCACGTTGGTAGTAGGCTGAAGCAGGAAAGGTT
GCCACTGAGGACAGCTCTTGAGGGTCAGCTACATCAGAGGCAGGAAAGGA
GGTGGTGGGCCACCTTACATAGCTCCTGTGAAGGCAGCAGGCTGACGAGA
TGCTATGGTGCCACCATTTTGACAGGAGCCGCCATTTTGCACAGCTCCTG
TGGAACATTTTATTGCACCACCATGGCAAGCACAGAACGCCAACACTTGC
TAAACTGTTTTGAAAATGACTTCTGTCACTACCAAACCTTCATTTATCAT
TACCCCTCCTTCTTCCTTCTTCTCTTAAAATGGCACCGCCCCCCCATATT
TATTTGCACATACCCTTAATGATCCTTATCCCCTCCCCACTTTATTTTCA
CCGTTTATTGCCCTTCTCCCCTCCCCCCCCTTTTGCCATTTCCCTCCTTC
TTGTATCCCCCCCTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_a02.b1 MSMg01no429_a02.b1 CHROMAT_FILE:
MSMg01no429_a02.b1 PHD_FILE: MSMg01no429_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:21 2005
         (613 letters)



>mm_chr13_10408762_10409773
          Length = 1012

 Score = 1071 bits (554), Expect = 0.0
 Identities = 587/598 (98%), Gaps = 3/598 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattcaatcctgatcctagcagcaagagcagcaagcaccaaagtagagcaaaaaacaaa 76
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 217 gaattcaatcctgagcctagcagcaaaagcagcaagcaccaaagtagagcaaaaa-caaa 275

                                                                       
Query: 77  aataaaccaaggttctgtatggccaaataaataagtattctgagaaactaggaaggcagc 136
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 276 aataaaccaaggttctgtatggccaaataaataagtattctgagaaactacgaaggcagc 335

                                                                       
Query: 137 cctgggaattgggttcagaatttggtcctgactccctgtctggatgtatttttatcaaac 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cctgggaattgggttcagaatttggtcctgactccctgtctggatgtatttttatcaaac 395

                                                                       
Query: 197 tgacatcctgacagtcaggatgaatgaaagattccccaaagtgaacatcatggaaggaag 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgacatcctgacagtcaggatgaatgaaagattccccaaagtgaacatcatggaaggaag 455

                                                                       
Query: 257 aaggcaggaggcttgactatgtggaatgcatatactctgagagagaaaagtaagtcagaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaggcaggaggcttgactatgtggaatgcatatactctgagagagaaaagtaagtcagaa 515

                                                                       
Query: 317 gcagaaaaatcaaaaagctatccagggacttgcaaatggaagctctgagttacagctcat 376
           |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 516 gcagaaaaatcaaaaagctatccagggagttgcaaatggaagctccgagttacagctcat 575

                                                                       
Query: 377 ggccacagagggaacaggacatttatgatgctcactagacagagctcaggagaagggtgg 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ggccacagagggaacaggacatttatgatgctcactagacagagctcaggagaagggtgg 635

                                                                       
Query: 437 caagcaggagctgttggattggataatgacagatactaatcaattggaaagccaaacatg 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 caagcaggagctgttggattggataatgacagatactaatcaattggaaagccaaacatg 695

                                                                       
Query: 497 aaatctaggatctgatacctagttgaaaaagattgtaatg-gaatgagaaaataaagtca 555
           || |||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct: 696 aactctaggatctgatatctagttgaaaaagattgtaa-gagaatgagaaaataaagtca 754

                                                                     
Query: 556 atattttaaaaattatttgaaaaccagaaaggcattcattattttatcctttgcagaa 613
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 755 atattttaaaaattatttgaaaaccagaaaggcactcattattttatcctttgcagaa 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1012
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1002
Effective search space:   604206
Effective search space used:   604206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)