BAC Information

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BAC

Clone NameMSMg01-429D09
Chromosome13 (Build37)
Map Location 40,050,633 - 40,051,016
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc35b3, EG666867, LOC100041779, LOC382747, A230103O09Rik
Downstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429D09.T7 (MSMg01no429_d09.b1)MSMg01-429D09.TJ (MSMg01no429_d09.g1)
ACCAG521993AG521994
length737722
length of high quality
(start - end)
598 (40 - 637)388 (74 - 461)
definitionCHROMAT_FILE: MSMg01no429_d09.b1 PHD_FILE: MSMg01no429_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:37 2005CHROMAT_FILE: MSMg01no429_d09.g1 PHD_FILE: MSMg01no429_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCTTACGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACA
TCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCT
CACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCT
GGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGC
AGGCTTGTACAACCACTCTGGAAATCATTCTGGCGGTTCCTCAGAAAATT
GGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATC
CAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATG
GACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTC
TCACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATA
CCCAAGATATAAGATACAATTTCCTAAACACATAATACTCAAGAAAAATG
AAGACTGAAGTGTGGACACTATGGCCCTCCTTAGAAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTACAGAAAAACTTTGTTTTCAGAGGTTCCAGAGTGAGA
GTAGGTTCTCATTGGATCTTCTGGTAACATTTACATATGGAAAAGATGAA
AAATATTAGCAGAGGGTCGACCAGAAAATGTCATTAGGGATATCAAAGGC
CAAGGCATGCTTTATTTCCAGCTCATTCAAAAGATGAGGAACAGACACGT
AGCCTAAGCCTTTCACATAAATCCACAGTGCAGGTGGATGGAGAAGCCAA
CAGCCCTGATTCCAGGCCATTCTTTTAGGCCCCATGTCATACTTTCCTCT
CTGGTGCTGAAAGATACGCACAGCTTCACCGCAGGCTACTTGGGAGTCAG
TGGGAGAAAGCCAGTACCACCCTGCATGCCAGGCTCCATTCTTCATGCAC
TGTATTGCGCCCCATGAGCTTCCTCTATATATTCATAGGTCCACTCCTGA
AAGCTCAACAAAGCAAAGGATGTGTACTACTCAACCAAGAAACCCTTGCG
CCCTTGTCTTTGTTTCTTTGCCCACCCGTACACACCCACAGGTTCTGGCG
TTGTTATCATTTGTCCTCCCCCCCCGCTCTCCCTAATAAAAGGAGCAACC
TCCTATTCCCAAATCTATTCCCATTCTCATCCCCCCACCCTGATTACCTC
ATCCCCTTCTTCTTTTTGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_d09.g1 MSMg01no429_d09.g1 CHROMAT_FILE:
MSMg01no429_d09.g1 PHD_FILE: MSMg01no429_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:37 2005
         (388 letters)



>mm_chr13_40050433_40051220
          Length = 788

 Score =  712 bits (368), Expect = 0.0
 Identities = 380/384 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgttttcagaggttccagagtgagagtaggttctcattggatcttctggtaacattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tttgttttcagaggttccagagtgagagtaggttctcattggatcttctggtaacattta 525

                                                                       
Query: 61  catatggaaaagatgaaaaatattagcagagggtcgaccagaaaatgtcattagggatat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 524 catatggaaaagatgaaaaatattagcagagggtcgaccagaaaatgtcactagggatat 465

                                                                       
Query: 121 caaaggccaaggcatgctttatttccagctcattcaaaagatgaggaacagacacgtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 caaaggccaaggcatgctttatttccagctcattcaaaagatgaggaacagacacgtagc 405

                                                                       
Query: 181 ctaagcctttcacataaatccacagtgcaggtggatggagaagccaacagccctgattcc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 caaagcctttcacataaatccacagtgcaggtggatggagaagccaacagccctgattcc 345

                                                                       
Query: 241 aggccattcttttaggccccatgtcatactttcctctctggtgctgaaagatacgcacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aggccattcttttaggccccatgtcatactttcctctctggtgctgaaagatacgcacag 285

                                                                       
Query: 301 cttcaccgcaggctacttgggagtcagtgggagaaagccagtaccaccctgcatgccagg 360
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 284 cttcaccgcaggctacttgagagtcagtgggagaaagccagtaccaccctgcataccagg 225

                                   
Query: 361 ctccattcttcatgcactgtattg 384
           ||||||||||||||||||||||||
Sbjct: 224 ctccattcttcatgcactgtattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)