BAC Information

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BAC

Clone NameMSMg01-429E10
Chromosome13 (Build37)
Map Location 81,845,812 - 81,846,233
singlet/doubletsinglet
Overlap genePolr3g
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3
Downstream gene2900024O10Rik, Cetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429E10.T7 (MSMg01no429_e10.b1)MSMg01-429E10.TJ (MSMg01no429_e10.g1)
ACCAG522043AG522044
length729706
length of high quality
(start - end)
639 (40 - 678)438 (75 - 512)
definitionCHROMAT_FILE: MSMg01no429_e10.b1 PHD_FILE: MSMg01no429_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:42 2005CHROMAT_FILE: MSMg01no429_e10.g1 PHD_FILE: MSMg01no429_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGGCTTATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCA
ACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGG
ACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGA
AGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAA
TTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTA
TATATAAGTGATCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAA
CAGCTTCGGTGAAGTAGCTGAATATAAAATTAACTCAAACAAGTCAATGG
CCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACA
ACACCCTTCTCAATAGTCACAAATAATATAAAATATTTCGGCGTGACTCT
AACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGA
AAGAAATTAAAGAAGATCTCAGAAAATGGAAAGATCTCCCATGCTCATGG
ATTGGCAGGATCAATATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTA
CAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCCACGAAT
TAGAAGGAGCAATTTGCAAATTCATCTGG
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGCCGGATACATTTACTGTTGTTA
TCAGTTTATGCCCAATGACTGCAAGATAAAAATAGGAAGTTGGAGTCTGC
AGAGCTTATTTCTGGGACAATATCCCATTAAACAGTGTTAAGTCAGATAC
TCTTAGAGTGAATTTCCCAAACCATTTCCAGGGCCCAACTTCAAAGATGT
TGGCTTATTAGGTTTGAGAACTAAGTGTTCCCCAGGACTCAATATGTTTT
ATATTTATATTTTTTATCTTCTTGTTAATTCCTCTGATCAGGCAAGTTTG
GTAAACTTTTCCTAGATTTATTTCTAATCTCTAGTTAGTGACATATTCTA
GACTGGCAGGTAGCACAGTGGTCTTGTCCCTGCCTGTTGGGCTCCTACAG
GTGCTGAGCAAAGGTGTCAGCCCCTTTACTCAGCAGAGGTCGTACTTGAA
AGACCAGCTTTCTGTAGAATCAGCATGGCAGAGTGACTCAGCAATGCGAA
TGAAGGCATTGTGATATTTTACGTCTCTTCACAGCATACTTATGTAACGA
GCCTTTGAAATGTATATGAATTTCCTACCGGATTTTGTTTTCAAAGGTAC
CCCTTGTTTGACCCCCCCCTTTTCCCATAAAAGTTCTTTTCTTCTAACCG
CCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_e10.g1 MSMg01no429_e10.g1 CHROMAT_FILE:
MSMg01no429_e10.g1 PHD_FILE: MSMg01no429_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:42 2005
         (438 letters)



>mm_chr13_81845812_81846649
          Length = 838

 Score =  770 bits (398), Expect = 0.0
 Identities = 416/422 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgccggatacatttactgttgttatcagtttatgcccaatgactgcaagataaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctgccggatacatttactgttgttatcagtttatgcccaatgactgcaagataaaaata 363

                                                                       
Query: 61  ggaagttggagtctgcagagcttatttctgggacaatatcccattaaacagtgttaagtc 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 362 ggaagttggagtctgcagagcttatttctgggacaatattccattaaacagtgttaagtc 303

                                                                       
Query: 121 agatactcttagagtgaatttcccaaaccatttccagggcccaacttcaaagatgttggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agatactcttagagtgaatttcccaaaccatttccagggcccaacttcaaagatgttggc 243

                                                                       
Query: 181 ttattaggtttgagaactaagtgttccccaggactcaatatgttttatatttatattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttattaggtttgagaactaagtgttccccaggactcaatatgttttatatttatattttt 183

                                                                       
Query: 241 tatcttcttgttaattcctctgatcaggcaagtttggtaaacttttcctagatttatttc 300
           ||||| |  ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 182 tatctcccagttaattcctctgatcaagcaagtttggtaaacttttcctagatttatttc 123

                                                                       
Query: 301 taatctctagttagtgacatattctagactggcaggtagcacagtggtcttgtccctgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 taatctctagttagtgacatattctagactggcaggtagcacagtggtcttgtccctgcc 63

                                                                       
Query: 361 tgttgggctcctacaggtgctgagcaaaggtgtcagcccctttactcagcagaggtcgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 62  tgttgggctcctacaggtgctgagcaaaggtgtcagcccctttactcagcagaggtccta 3

             
Query: 421 ct 422
           ||
Sbjct: 2   ct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)