BAC Information

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BAC

Clone NameMSMg01-429P08
Chromosome13 (Build37)
Map Location 89,100,636 - 89,291,398
singlet/doubletdoublet
Overlap geneEdil3
Upstream geneLOC667230, EG435375
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429P08.T7 (MSMg01no429_p08.b1)MSMg01-429P08.TJ (MSMg01no429_p08.g1)
ACCAG522565AG522566
length731712
length of high quality
(start - end)
568 (40 - 607)444 (74 - 517)
definitionCHROMAT_FILE: MSMg01no429_p08.b1 PHD_FILE: MSMg01no429_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:35 2005CHROMAT_FILE: MSMg01no429_p08.g1 PHD_FILE: MSMg01no429_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,290,874 - 89,291,398)(89,100,636 - 89,101,079)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CCTTATAGGAATGATAGAAAACACAAACTAACTGTTATTATAAAGAAATT
TTGGTTTCTTCTTTATAAACTCCTGACTAGACAAGGAGAGCAATTCATGA
GGATACCAGGAACCTTCTAACTTATGGTTCACTGTTACCTGAATCATGGT
CTAAGATTAAATCCCATATTAAGTCCCTGACAGCAGGGCAGTGGGAAATA
CAAATGGAGAGTTGAAGGGATGCAAGCTCTGCTTTCTCAAGGAGGATTCC
CAGACATTACCCTCTGACAGATCTGCTTATAAGCCTTGGCTCTGTAAAAG
TCTCATAACCACAGTGTTGTAGTTTGGGTTTATGACTGGGAAGAAACATT
ATGACCACTGCAACTCTTTGTTTGTTTGTTTTTGTTTTTGTTTTTGTTTT
CGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGT
AGACCAGGCTAGCCTCANACTCAGAAATTCGCCTGCCTCTACCTCCCAAG
TGCTGGGATTAAAGGCATGCGCCACCAGGAAAACGATCAATTCAGGCTGG
TTTCTTGAGGTATAGCTCTCAGCATGACTGTCAGTAAGGCATCCTTTAGA
CATGGTGGTGCGAAAGGTGCTGAGAGATTAACATCTTAATCTAAAGGGGA
CTGTGTGCCATAATAAGGCGTACCTTAAGCC
CATTATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTAGTAAATTTTTGCAGTTCTGGTATT
TTCCTTGTAAGGAGAATTTTAATTACTGCTTCAATATCATTGCAGAATAT
AGGTTCTGTTTATGTTTAGTCTTCTGGAGTTAATGAAGTCTGTAAGTTTA
AGAGTTATCTATAGTTTCCAGGTTTTGTGAATATAAGTTCTTTAAAGGAT
CCCTAATGATCTGAAACGTCTTTGGAAACTAGTCCAATAATCTCATTTTA
TCCTCAATTTATTAATTTAAATCTTCTTCCTCTTTTTGTTATTTTGGCTG
GAACTTCATCAAAATCTTGTTTATTGTTTCTAAGAATCAGCTTTTTACTT
GGTTGATATGTTTCATTTAGCCTTTATTTCACCAAATTATCCCCTAATAT
GTTTTTATGATTTGGATCAACTAGATTTGAGTTCGATCTCCTGTTTATTG
ATAGGCTCAACTTTTATCATTAGACAGTTCTCTCGAGATCACTTTAATTT
TTATTTTTCTAAATGTGAGCATTTATAAATACCAATTTCTCATTTAATAC
TATCTTTTGTTATCTCACAGATGATCCTGAGAGTTTATGCTATTATTCTC
TGTTGTTTCCCTTCTGCGGNACTTTAACCTCTATACTTTTTTTTTTTCTA
CCCCCAATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_p08.b1 MSMg01no429_p08.b1 CHROMAT_FILE:
MSMg01no429_p08.b1 PHD_FILE: MSMg01no429_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:35 2005
         (568 letters)



>mm_chr13_89290874_89291841
          Length = 968

 Score = 1009 bits (522), Expect = 0.0
 Identities = 524/525 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaccttataggaatgatagaaaacacaaactaactgttattataaagaaatttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggaattcaccttataggaatgatagaaaacacaaactaactgttattataaagaaatttt 466

                                                                       
Query: 64  ggtttcttctttataaactcctgactagacaaggagagcaattcatgaggataccaggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggtttcttctttataaactcctgactagacaaggagagcaattcatgaggataccaggaa 406

                                                                       
Query: 124 ccttctaacttatggttcactgttacctgaatcatggtctaagattaaatcccatattaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccttctaacttatggttcactgttacctgaatcatggtctaagattaaatcccatattaa 346

                                                                       
Query: 184 gtccctgacagcagggcagtgggaaatacaaatggagagttgaagggatgcaagctctgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtccctgacagcagggcagtgggaaatacaaatggagagttgaagggatgcaagctctgc 286

                                                                       
Query: 244 tttctcaaggaggattcccagacattaccctctgacagatctgcttataagccttggctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tttctcaaggaggattcccagacattaccctctgacagatctgcttataagccttggctc 226

                                                                       
Query: 304 tgtaaaagtctcataaccacagtgttgtagtttgggtttatgactgggaagaaacattat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgtaaaagtctcataaccacagtgttgtagtttgggtttatgactgggaagaaacattat 166

                                                                       
Query: 364 gaccactgcaactctttgtttgtttgtttttgtttttgtttttgttttcgagacagggtt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gaccactgcaactctttgtttgtttgtttttgtttttgtttttgttttcgagacagggtt 106

                                                                       
Query: 424 tctctgtgtagccctggctgtcctggaactcactctgtagaccaggctagcctcanactc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 105 tctctgtgtagccctggctgtcctggaactcactctgtagaccaggctagcctcaaactc 46

                                                        
Query: 484 agaaattcgcctgcctctacctcccaagtgctgggattaaaggca 528
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  agaaattcgcctgcctctacctcccaagtgctgggattaaaggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_p08.g1 MSMg01no429_p08.g1 CHROMAT_FILE:
MSMg01no429_p08.g1 PHD_FILE: MSMg01no429_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:35 2005
         (444 letters)



>mm_chr13_89100436_89101279
          Length = 844

 Score =  820 bits (424), Expect = 0.0
 Identities = 439/444 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagtaaatttttgcagttctggtattttccttgtaaggagaattttaattactgcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtagtaaatttttgcagttctggtattttccttgtaaggagaattttaattactgcttca 260

                                                                       
Query: 61  atatcattgcagaatataggttctgtttatgtttagtcttctggagttaatgaagtctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatcattgcagaatataggttctgtttatgtttagtcttctggagttaatgaagtctgt 320

                                                                       
Query: 121 aagtttaagagttatctatagtttccaggttttgtgaatataagttctttaaaggatccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtttaagagttatctatagtttccaggttttgtgaatataagttctttaaaggatccc 380

                                                                       
Query: 181 taatgatctgaaacgtctttggaaactagtccaataatctcattttatcctcaatttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatgatctgaaacgtctttggaaactagtccaataatctcattttatcctcaatttatt 440

                                                                       
Query: 241 aatttaaatcttcttcctctttttgttattttggctggaacttcatcaaaatcttgttta 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 aatttaaatcttcttcctctttttgttattttggctggcacttcatcaaaatcttgttta 500

                                                                       
Query: 301 ttgtttctaagaatcagctttttacttggttgatatgtttcatttagcctttatttcacc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ttgtttctaagaatcagctttttacttggttgatatgtttcatttagcctttattttacc 560

                                                                       
Query: 361 aaattatcccctaatatgtttttatgatttggatcaactagatttgagttcgatctcctg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 561 aaattatcccctaatatgtttttatgatttggatcaactagatttgagtttgatttcctg 620

                                   
Query: 421 tttattgataggctcaacttttat 444
           ||||||||||| ||||||||||||
Sbjct: 621 tttattgatagactcaacttttat 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)