BAC Information

Click to search

BAC

Clone NameMSMg01-430E06
Chromosome13 (Build37)
Map Location 107,333,446 - 107,333,820
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668025, Olfr717-ps1, LOC631097
Downstream geneEG620949, Ipo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366, Apoo, AI197445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430E06.T7 (MSMg01no430_e06.b1)MSMg01-430E06.TJ (MSMg01no430_e06.g1)
ACCAG522800AG522801
length767786
length of high quality
(start - end)
376 (73 - 448)350 (82 - 431)
definitionCHROMAT_FILE: MSMg01no430_e06.b1 PHD_FILE: MSMg01no430_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:02 2005CHROMAT_FILE: MSMg01no430_e06.g1 PHD_FILE: MSMg01no430_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATGAAAGGCAAAAATATTCTTGTATGTGTGCTCTAATACA
TAGTTGCAACTACCCACATCTAGCTATTGAGTAGTTGAAATGTGGCTAGT
GTGAATGCATCTAAATTTAATTAATTGTATGTACTAATACCTACTCTATG
AGATAGGATATATAAGCCTTAGCCAATAACCAGACGATTGCCAACATTAA
TTGAGCAAAATATTGCCATTATCTTACAAAGTAAAGTAAATGGAAAAATA
AAAGTGAAGCGATAATGTGGATTGTTCTGGTGCTGTTTGTATTTTGATGT
TAATCCTACTTCCTCAAGAGGGGCTATCCTGACAAGGAATAGATCACATA
CTCAGGTGATCTTACTGAACCTTCTCCCCATTCTAAGTGGTCAAATAAAG
GCTGGCGCCTATGGTTGAGCAATGTAAGGGAAAGATGTTACTGGAGGTCT
TCTCTTCTATTCCCTTTTTTTCCCTTTTTTTTCCCCTTTTTTTCCCCCTT
TCCTTTCTTTTTTCCCTTTTTTTCTTCCCTTTCTCCCTTTTTTTTTTCCT
TCTCTCTTTTTTTCCCTCTCTCCTCTTCCTCTCTTTTTTTTTTCTCCCTC
ATTCTTTTCTTTTTTCTTTTTTTTCCTTATTTCCTCTTTTCCCTTTTTTA
CTCTTTTTCTCTTTTCCCTCTTTCTTCCTCTCTTCTCACATAATTTTTCC
CTCTTCTCTCCCCCTCC
GGGCTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGACACAGTGCCCAGGA
TGACTATATTTGATATTAGTCATTGTCTTAGTTTGGGTTTTCCTGCTGTG
AACAGATACCATGGCCAAGGCATGGCTTACAGGTTCAGAGGTTCAGTCTA
TTATCATCAAGGCAGGAACATGGCAGCATCCAGGCAGGAATGGTGAAGGA
GGAGCTGAGAGTTCTACATCTTGATCTGAAGGCTGCTAGCATTATACTGA
CTTCCAGGCAGCTAGGATGAGGGTATTATTAGCCCACGCCTACGGTAATA
ACTTCCCTCTAACTGACAATACAATATTGACTTCTCCCAACAAGGCCACA
CCTCCTAATAGTGCTACTCCCTGGGCCAAGCATATACCAACCATCACAGT
CTTTACTGTGGTATGTCCACTATGGTGACTGGCCGCGTCCAGGATAGTTA
AAGTTCACTTGAGGCGTGGCATTCGTGATTTTTCTTCTTTGGGTTCACTA
CTCATCCTTTCGATTCTTCTCCCTGTCCTATACTTCCTTCCTTTTACCCG
CCGATGATTCTCTTCCGTCGTTCTCCCTTTTTTATTTCTTCCTGTTTTCC
TTCTTTTCCTTCCCCCTCTTCTTTATTTCTCTACCGTCCACCTTTTTTGC
TTTATAACCTATCCCTACCCATTTCCCGCTGTTCCTCTTTTAACCCTATA
TATACCTCTTTTCCATCTCTTATTCCCTCCCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_e06.b1 MSMg01no430_e06.b1 CHROMAT_FILE:
MSMg01no430_e06.b1 PHD_FILE: MSMg01no430_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:02 2005
         (376 letters)



>mm_chr13_107333246_107334020
          Length = 775

 Score =  696 bits (360), Expect = 0.0
 Identities = 372/376 (98%), Gaps = 1/376 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatattcttgtatgtgtgctctaatacatagttgcaactacccacatctagctattgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatattcttgtatgtgtgctctaatacatagttgcaactacccacatctagctattgagt 260

                                                                       
Query: 61  agttgaaatgtggctagtgtgaatgcatctaaatttaattaattgtatgtactaatacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgaaatgtggctagtgtgaatgcatctaaatttaattaattgtatgtactaatacct 320

                                                                       
Query: 121 actctatgagataggatatataagccttagccaataaccagacgattgccaacattaatt 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 actctatgagataggatatataagccttagccaataaccagac-attgccaacattaatt 379

                                                                       
Query: 181 gagcaaaatattgccattatcttacaaagtaaagtaaatggaaaaataaaagtgaagcga 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 gagcaaaatattgccattatcttacaaagtaaagcaaatggaaaaataaaagtgaagcga 439

                                                                       
Query: 241 taatgtggattgttctggtgctgtttgtattttgatgttaatcctacttcctcaagaggg 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taatgtggattgccctggtgctgtttgtattttgatgttaatcctacttcctcaagaggg 499

                                                                       
Query: 301 gctatcctgacaaggaatagatcacatactcaggtgatcttactgaaccttctccccatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctatcctgacaaggaatagatcacatactcaggtgatcttactgaaccttctccccatt 559

                           
Query: 361 ctaagtggtcaaataa 376
           ||||||||||||||||
Sbjct: 560 ctaagtggtcaaataa 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 775
Length adjustment: 9
Effective length of query: 367
Effective length of database: 766
Effective search space:   281122
Effective search space used:   281122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)