BAC Information

Click to search

BAC

Clone NameMSMg01-430P14
Chromosome13 (Build37)
Map Location 20,595,645 - 20,727,155
singlet/doubletdoublet
Overlap geneElmo1, LOC100040226
Upstream geneEpdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430P14.T7 (MSMg01no430_p14.b1)MSMg01-430P14.TJ (MSMg01no430_p14.g1)
ACCAG523340AG523341
length766796
length of high quality
(start - end)		368 (81 - 448)242 (83 - 324)
definitionCHROMAT_FILE: MSMg01no430_p14.b1 PHD_FILE: MSMg01no430_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:05 2005CHROMAT_FILE: MSMg01no430_p14.g1 PHD_FILE: MSMg01no430_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,595,645 - 20,596,012)(20,726,914 - 20,727,155)
sequence
NAAAACACATCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCATCACCTACTTGGGATGGAAATTAAATATTCATCA
CGTAATTTTGCATCGAATAATACAGAAGATATCAGGAAGAGGATTCAGAG
GTGGGTGGAGAATCTGAACAGTAGATAAAGGCAAAAAAAAATAAGGCAGC
CTTTGGAACCCTTGAGATTAGTAGGGGCCCAGAAAGAAGTGCCCTGGAGA
ACTGGGTCACTACATATGGAAAAGATTTTTATATTCATTATTCATAATGA
AGGCTCACACGGAGGCCCTTGTGTGTGTTTATGAGACTGTTACCACTGTG
CTACAGTCCAAGGCCTGGAAAGATGCTAACTGAGGGCCCTAGAACACCAT
CTTTGGCAAATTTGGAGAGAATCAAAAGATATTTTTGTTTTCCAAATGCT
ACAGAGAACATTCACTTTTGTTCCTTCTGTGCTAAGAGACATTCGTGGAT
CAGGCTGTTCTAATGATGTCATTGGAGTCCCTCTCTCTATGAGGTTGAGT
TCCCTGTTTGTTTGTCTCCCCCAACAAATATCTCTCCCTTTCGGCTATTC
TTCTTCTTTTCTTCACTTCAATTCCATTCTACTCTTATCTTTTTATCACT
ACTTTTATTCTGCTCTCTCATCCACCTCTTTTGCTCTATTCCTATCTTTC
CCTTATACTCTATCTTTCTTCCTTTTTCTTACCTATTTTTTTCCCTATCT
ACCTCTCCCTTCTTCC

NTTTCTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGAGCCAGGGGTATA
GATTTAGCTGAAGTTATTATCAAAACTCGGGTCTTAATGACTACAGAGAC
CATGCCTCTGACTCTCAGGGCTGCAGGTTAGATGTTCCCTGACCTCTTGT
CATCCTGTCCTTAAGATGGCTGGACAGGATGCTGAATGAAGAGGGCTTTG
AATTGTGCTGAGCTGTGTGTGCACTTGAGGCTCTTCAATCGTTTTTTTGG
CAGTCTCATTTGTTATGTCTGTGGTTTTTGCAGATGGGGAATTGCCTAGG
TTTCAACGTGAACTTAGAGCAATTCTCTAAGTCTGTGGGCTGTGTCATCC
TGTCCCTTGAGTATATGGTCTGACCTCCCATCATCCACGGTAACATCGTG
TCCTCCTTCTTTGTTGCGCTACCATTCCTATCCTCCTTTCCTCTGCTCCT
TTTCTATTCTTCATTGCCTTTCTTCTCATTTTACTTCCTGTTTCCTCTCA
CCTACCTTTTTTCTTCCCCTTTCTCCACTTTCTCGTCCCTTCCTATCATA
TTTCCCTTTTCCCTTTCCCTCTTCCCTCCTCCTATCTCCCTTTCTCTCTT
CCCTATCCTCCCTCCCCCCCCGCCTTTCTTCTTTCTTCTTTCCCCCCCTC
CCTCTTCTTCTCACTCCTCTATTCTCCCTATCTCTATACCCCCCTTTCCT
ATCCTCCTCCCTTCTTCCATCCCTTTTTCTCCCCTCCTTCCTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_p14.b1 MSMg01no430_p14.b1 CHROMAT_FILE:
MSMg01no430_p14.b1 PHD_FILE: MSMg01no430_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:05 2005
         (368 letters)



>mm_chr13_20595445_20596212
          Length = 768

 Score =  704 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaaattaaatattcatcacgtaattttgcatcgaataatacagaagatatcaggaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaaattaaatattcatcacgtaattttgcatcgaataatacagaagatatcaggaaga 260

                                                                       
Query: 61  ggattcagaggtgggtggagaatctgaacagtagataaaggcaaaaaaaaataaggcagc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ggattcagaggtgggtggagaatctgaacagtagatagaggcaaaaaaaaataaggcagc 320

                                                                       
Query: 121 ctttggaacccttgagattagtaggggcccagaaagaagtgccctggagaactgggtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttggaacccttgagattagtaggggcccagaaagaagtgccctggagaactgggtcac 380

                                                                       
Query: 181 tacatatggaaaagatttttatattcattattcataatgaaggctcacacggaggccctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacatatggaaaagatttttatattcattattcataatgaaggctcacacggaggccctt 440

                                                                       
Query: 241 gtgtgtgtttatgagactgttaccactgtgctacagtccaaggcctggaaagatgctaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtgtttatgagactgttaccactgtgctacagtccaaggcctggaaagatgctaac 500

                                                                       
Query: 301 tgagggccctagaacaccatctttggcaaatttggagagaatcaaaagatatttttgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagggccctagaacaccatctttggcaaatttggagagaatcaaaagatatttttgttt 560

                   
Query: 361 tccaaatg 368
           ||||||||
Sbjct: 561 tccaaatg 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no430_p14.g1 MSMg01no430_p14.g1 CHROMAT_FILE:
MSMg01no430_p14.g1 PHD_FILE: MSMg01no430_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:05 2005
         (242 letters)



>mm_chr13_20726714_20727355
          Length = 642

 Score =  468 bits (242), Expect = e-136
 Identities = 242/242 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagagccaggggtatagatttagctgaagttattatcaaaactcgggtcttaatgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agcagagccaggggtatagatttagctgaagttattatcaaaactcgggtcttaatgact 383

                                                                       
Query: 61  acagagaccatgcctctgactctcagggctgcaggttagatgttccctgacctcttgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acagagaccatgcctctgactctcagggctgcaggttagatgttccctgacctcttgtca 323

                                                                       
Query: 121 tcctgtccttaagatggctggacaggatgctgaatgaagagggctttgaattgtgctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcctgtccttaagatggctggacaggatgctgaatgaagagggctttgaattgtgctgag 263

                                                                       
Query: 181 ctgtgtgtgcacttgaggctcttcaatcgtttttttggcagtctcatttgttatgtctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgtgtgtgcacttgaggctcttcaatcgtttttttggcagtctcatttgttatgtctgt 203

             
Query: 241 gg 242
           ||
Sbjct: 202 gg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |