BAC Information

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BAC

Clone NameMSMg01-432K13
Chromosome13 (Build37)
Map Location 24,608,571 - 24,608,894
singlet/doubletsinglet
Overlap genenone
Upstream geneHist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
Downstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432K13.T7 (MSMg01no432_k13.b1)MSMg01-432K13.TJ (MSMg01no432_k13.g1)
ACCAG524624AG524625
length772771
length of high quality
(start - end)		477 (69 - 545)415 (71 - 485)
definitionCHROMAT_FILE: MSMg01no432_k13.b1 PHD_FILE: MSMg01no432_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:28 2005CHROMAT_FILE: MSMg01no432_k13.g1 PHD_FILE: MSMg01no432_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTATGTTTTTCAGAATAAATCTAACGCCTGATTTTTCCTTAATTTCCTGG
TGTGCTATATCATAGACATATACCAGCCAACATGCCCAGTTTATACAGTG
CTGAGATCGAACCCAAGACCTTATACATAAGTAGGCTAACAACTACTCTA
CCAAAGGAACCAGTTACATCCCCAGCCCACACATGAACCATTTTTGCCTG
CATGCAGGTCTGTGTACCACACGTTTATAGCGCCTGTGGAAGAGAGCATT
GTCTCTTCTGGGACTGGAATTACAGATGGTTTGAGCTGCCATATAGGTGT
TGGGAGTCAAACCTTGGTCCTGGAGGAGCAGCCAGCAGAGCTCTTAACAG
CCGAGCCATCTCTCCAGCCCCAAGGGAGCCACTTTTGAAAGCCTTTTACT
CAGCAAGATAGTTCTATAAATGATTGTTACTTACAAGTTACAGACTGAAC
AAAACCATTCAGAACTCCATAANAGCTTTAATTTCAGGCTACTGTGTGCA
GNAAAGAGGGGCATTATTTTACTTCCCTTTATTGACATGGTGATGGGGGT
CCTTCTGTTAGATATTTGCCTAGCTACCATATGCTGAGAAGACAGGGTTG
GGCTTCCCTTGGCATGGTTAAGAAAATGGACTAGGTTGATCTAAAAAATA
TCTGGTGTTACTATATGACACCTCCCCCCTTTTCCATCTGTTGTATTCGC
CTCCTGTTCTTTTCTCACTCCA

AATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGCCAACCTGGGACAGAGCAAGTTCCAA
GTAAAGAATAGCTTAGGTCCAGGCATGGTGGTGTTATCTTTAATCTGGGC
CACACCTTCTGCTGGAGATCAACATAAGGACAATGGAAGAAGGAAGGATT
CCTTTTTCTTCATCTGCTTGCACTTACTTGCCAGCACATCTGTTGGAACC
TACTTATTCAGGATTCCAGCTTATACAGAAGACCAGCTAAAACAACCAGC
CTTGTGGGACTGAGCAACTATTAGATTCTTGGTCTTCCCATTCACAGCTG
CCCATTGTTGGTTTAGTTGGATTTAACACTATAAGTCATTTCAATAATTT
CCCTTAAATAATTTCCCTAAAGACATTTCATATGTTCTGTTACTTTAGAG
AACCTTGACTAATAAAACTAGCTAGAATAAATAATTCATTTAAGTTTCCT
CCTGCTTTGGCCCCTGAGTGCTAGGGCTACAGATGATAGTTATCACGCTG
AGTCTCTAAATGGACAAATGGGCTTTCCATCTAGCTTGTATGGGTCTTTT
TGGTTATAAGATCTTTTTTGTACCTTAGAACCCTCCCTTATTGGGTGGGA
GCCAGTTTCTTATACTTTTCTCTATCCGTACTCCCTGAGAGGAAAAGTAC
TACTCCTTCTATCCCCGAAAAAGGAACTATTTGTCTGGTTGGGTTGTGTT
CCTCGTTGACACTCTCCAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_k13.b1 MSMg01no432_k13.b1 CHROMAT_FILE:
MSMg01no432_k13.b1 PHD_FILE: MSMg01no432_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:28 2005
         (477 letters)



>mm_chr13_24608018_24608894
          Length = 877

 Score =  590 bits (305), Expect = e-173
 Identities = 319/324 (98%)
 Strand = Plus / Minus

                                                                       
Query: 154 ccagcccacacatgaaccatttttgcctgcatgcaggtctgtgtaccacacgtttatagc 213
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 877 ccagcccacacatgaaccatttatgcctgcatgcaggtctgtgtaccacacgtttatagc 818

                                                                       
Query: 214 gcctgtggaagagagcattgtctcttctgggactggaattacagatggtttgagctgcca 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gcctgtggaagagagcattgtctcttctgggactggaattacagatggtttgagctgcca 758

                                                                       
Query: 274 tataggtgttgggagtcaaaccttggtcctggaggagcagccagcagagctcttaacagc 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tataggtgttgggagtcaaaccttggtcctggaggagcagccagcagagctcttaacagc 698

                                                                       
Query: 334 cgagccatctctccagccccaagggagccacttttgaaagccttttactcagcaagatag 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 cgagccatctctccagccccaagggagccacttttgaaagccttttactcagcaagatag 638

                                                                       
Query: 394 ttctataaatgattgttacttacaagttacagactgaacaaaaccattcagaactccata 453
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 637 ttctataaatgattgttacttacaagttacagactgaacaaaaccactcagaaccccata 578

                                   
Query: 454 anagctttaatttcaggctactgt 477
           | |||||| |||||||||||||||
Sbjct: 577 aaagctttcatttcaggctactgt 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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