BAC Information

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BAC

Clone NameMSMg01-433G09
Chromosome13 (Build37)
Map Location 96,130,377 - 96,254,828
singlet/doubletdoublet
Overlap geneAggf1, Crhbp, S100z
Upstream geneAp3b1, Tbca, Otp, Wdr41, Pde8b, Zbed3
Downstream geneF2rl1, F2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433G09.T7 (MSMg01no433_g09.b1)MSMg01-433G09.TJ (MSMg01no433_g09.g1)
ACCAG525190AG525191
length714759
length of high quality
(start - end)
266 (311 - 576)373 (69 - 441)
definitionCHROMAT_FILE: MSMg01no433_g09.b1 PHD_FILE: MSMg01no433_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:28 2005CHROMAT_FILE: MSMg01no433_g09.g1 PHD_FILE: MSMg01no433_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,130,377 - 96,130,642)(96,254,456 - 96,254,828)
sequence
TTGCGGCCGCTAAACGAATCACAATCGAAAACGGTCCGNGGAATTCTTGT
TGCCCCAAACACTCTTAACCAGACTTGGCTATTGTCAGGATTTAAATTTT
CTATTAATCTAGTGATATGTAATATCAAGTTTTACCATTGATCTTATCTT
TCTCTGATTTCTATTGAAAATCTTTTTAGCAAAGGGTTCTTTTATTACTC
TTAATTATGTATATGTGTATAGGTCTCTGTGTGATTCTGTACAGATGCCC
CAAAGGCCAGAGGCATCAAATCCCTAACTGTGAGTCTACCTATCTCCAGT
CCNGTAGAATCTCTGCTCACTATTTACCAGCCACTTGGGCTCCTCTGCCT
GATACTTTCTGTAGTCAAACTGTCTAGAGTAACTTTATAAAAATTTTAAA
TGATTACAAATGTTTTCACACTGCCAAATCTTATCCCAAAAATCTCTTCT
AAACTGAGCTCCCAAAAGGAACAATTTTTAATAAGTATGTGAATAAAAAT
TCTGTCTTGCCTTCACATCTGCATGGTCTGTGACTCCAGTGACTTCTCAC
GTGTGAGCCAGGACGTTCTCTATATGGTGAACCGACTGTACCTTTGACTC
ACTGATCTACTGACATCACAGTTTTTTTGGAGAAAATACGTTTGTACTAA
TACCTATCTACTTCTGTCCTAGCTTTCTGATGGCCATCCCTGGCTGCCTT
TTTAATTTGTTTTT
AGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACAGATCTCCACTTAGGCGCAGCTGAATTT
GTGACTTCATCCAGAAAGAATTTCAGGGCAAGATGGCATAAAGGAGCTGG
AATTTATTCAAGGGATTTAAGAGGTTCTCAGGGAAAGCATAAGACACATC
CAAGACCAGGATTGTGAGCCTCTCAAGAGGGACTCTTGTAACAGTAGCAT
ATATGCAGTAGTATATATGAAGTATATGTAGCATATATGTAGTAATGTAT
ATGAAGAATATGTAGCATATATGTAGTAACAATGGCACATGTGGTTTGGT
GGCTTTCAAGTCACATCTCAGATGGCTTCTAAGAAACTTTCTCCCCACTC
TTTCCCTCTTTTTCTAGTAAGAGTATAAGGTCGCCCTGCAGGCGCGTGGA
TTATAATCTGATAAAATAAAACTATGAGCCCAAGAGTTGCCAGAGGCAGT
TAAGACGGCTGTTTTATTGTAAATGTGGCTTCCTTGTCACTTTTCCCGTT
CTTTTTTCTCCTGCTTTCGCTTCCCTCCTCCCTCTTTTTTTTTTTCCTTC
CTTCCTACCTCGTGTTCCGTTCCTCTCTCTTTCCCTTCTCCCTTTTTCCT
CTTCTCCTCCTTTCTTTTTCCTCTTTTCCCTTTTGTTCTTCCTTCACCTC
CATTTTTTTCCCTCGCTTTCCCTCCTTTTTCCCCTTCTTTTTTTCCCTTC
TCCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_g09.b1 MSMg01no433_g09.b1 CHROMAT_FILE:
MSMg01no433_g09.b1 PHD_FILE: MSMg01no433_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:28 2005
         (266 letters)



>mm_chr13_96130177_96130842
          Length = 666

 Score =  507 bits (262), Expect = e-148
 Identities = 265/266 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgctcactatttaccagccacttgggctcctctgcctgatactttctgtagtcaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgctcactatttaccagccacttgggctcctctgcctgatactttctgtagtcaaac 260

                                                                       
Query: 61  tgtctagagtaactttataaaaattttaaatgattacaaatgttttcacactgccaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctagagtaactttataaaaattttaaatgattacaaatgttttcacactgccaaatc 320

                                                                       
Query: 121 ttatcccaaaaatctcttctaaactgagctcccaaaaggaacaatttttaataagtatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatcccaaaaatctcttctaaactgagctcccaaaaggaacaatttttaataagtatgt 380

                                                                       
Query: 181 gaataaaaattctgtcttgccttcacatctgcatggtctgtgactccagtgacttctcac 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gaataaaaattctgtcttgccttcacatctgcatggcctgtgactccagtgacttctcac 440

                                     
Query: 241 gtgtgagccaggacgttctctatatg 266
           ||||||||||||||||||||||||||
Sbjct: 441 gtgtgagccaggacgttctctatatg 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no433_g09.g1 MSMg01no433_g09.g1 CHROMAT_FILE:
MSMg01no433_g09.g1 PHD_FILE: MSMg01no433_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:29 2005
         (373 letters)



>mm_chr13_96254256_96255028
          Length = 773

 Score =  721 bits (373), Expect = 0.0
 Identities = 373/373 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacagatctccacttaggcgcagctgaatttgtgacttcatccagaaagaatttcaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcacagatctccacttaggcgcagctgaatttgtgacttcatccagaaagaatttcaggg 514

                                                                       
Query: 61  caagatggcataaaggagctggaatttattcaagggatttaagaggttctcagggaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 caagatggcataaaggagctggaatttattcaagggatttaagaggttctcagggaaagc 454

                                                                       
Query: 121 ataagacacatccaagaccaggattgtgagcctctcaagagggactcttgtaacagtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ataagacacatccaagaccaggattgtgagcctctcaagagggactcttgtaacagtagc 394

                                                                       
Query: 181 atatatgcagtagtatatatgaagtatatgtagcatatatgtagtaatgtatatgaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atatatgcagtagtatatatgaagtatatgtagcatatatgtagtaatgtatatgaagaa 334

                                                                       
Query: 241 tatgtagcatatatgtagtaacaatggcacatgtggtttggtggctttcaagtcacatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tatgtagcatatatgtagtaacaatggcacatgtggtttggtggctttcaagtcacatct 274

                                                                       
Query: 301 cagatggcttctaagaaactttctccccactctttccctctttttctagtaagagtataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cagatggcttctaagaaactttctccccactctttccctctttttctagtaagagtataa 214

                        
Query: 361 ggtcgccctgcag 373
           |||||||||||||
Sbjct: 213 ggtcgccctgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)