BAC Information

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BAC

Clone NameMSMg01-433G23
Chromosome13 (Build37)
Map Location 22,865,170 - 22,865,693
singlet/doubletsinglet
Overlap geneV1rh9
Upstream geneHist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735
Downstream geneOTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433G23.T7 (MSMg01no433_g23.b1)MSMg01-433G23.TJ (MSMg01no433_g23.g1)
ACCAG525218AG525219
length757764
length of high quality
(start - end)		473 (38 - 510)376 (67 - 442)
definitionCHROMAT_FILE: MSMg01no433_g23.b1 PHD_FILE: MSMg01no433_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:31 2005CHROMAT_FILE: MSMg01no433_g23.g1 PHD_FILE: MSMg01no433_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:31 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
TCAACTCCCGTGACTGATAGCAAAGAAAATGTGTACATGCAGGTAGACAG
AGAGACGGACAGACTCACTCTCTTTCTCTCTCTCTCTCTCTCACCACACA
CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTGAACAAGACAA
TTTTGCTAGTGTAAAGCTCAAAGGTATTTCTTTTAAATTTTAGATTAAAC
ACCAGCTCCCAAACTCTCCTCTCTGCACACTCAAAATATCCTAGAGACCA
CAGGAAGAAGGGCAAGTTTCAGATACCTAAACTGCAACATTACCTGTCTC
TGTCCCTGCTTTGTTGACTCCAGAATATGCTATTGTGCAAAATGTGCTGT
CCAGACCCCTGTCTAGAATTGCAGCAACTTCCTCCAAAAAGTGTTTGCAT
CCTGGACACATGTTTTTCTACCTAGAAAGAAAGAAATGGTTTTGAAGTAT
ATTAATAAGGTAAATAAAATCTCTCTCTTTATGACTGTGGNCGGNACTCT
GGGGGACATGTTTGTTTCTGTGAATTATACTTTCAGTATTGGGGAAGTTC
TGAAAAAAAACCCTATACCTTATTTTGATCCTTCTGGCTTTTAAAAAAAC
CCAAAAATTCTTTCCCAAGGATGGCCAAGGAAATTTTAACTTTGTGGGGG
GACAATCCCCAAAAGGAAAAGGGGTGGAAACCATTGTTTCCCGTGAAGGT
GGGCCGG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTATCCCAGGTGGTTCCTGTTAGACCTTCTGTGTT
TGCATTCCTGTTTTATGTAAGAATCCAGTAACTTCTTTGTACCTTGCGAG
TGTGTCACCCAACTTCCTTATTGTCTTCTGTATAAAAAGTTTGATGCTCG
ATTTGACAAATTACATTCAGATTCTACACACCTCTCCTGTGTGCATCTGT
CTGTCATTCACCGACGCTTTGCCCACTCTCGACTAGAGACCTGTTCCATG
CAGACGAAGGGATCCAGAGGGTCTGCGGCACCAGATGTGGTAGTGAATAT
GTTAGTCCTCATACTTGGGAAGAAGAGGCTGGCAGATCACTGTGAGTTCT
AGTCCAGGCTGTTTCACATAGCCAGTTCTATTCCTTCCATGGTGAAATAG
GAATACTCTTTTGCNNAAACGAACCAGAAGAGAAAAAAAAAGAACATTAN
GCNAGACCTTCCTAAATAAACCCAGAGCTTGTGAAAAAAGATCCACTTGC
CCTGTATAGTTATGCCAAAATGTAACTCTCCAGTTCTCCTTTGAACCCTT
ATTGTACTTAACCTTGCTTCTAAAAAAAAATTGGGCCCCAACCCAAAAAA
TCCTTGGGGTTGGCCCCCAAATTCTTGGGATTAAAAAAAGGGCACTTACG
CCCCGGTTTCCTAAGATTTTTTTTCTCTTCATATAGATTTTCCCCTTCTT
TACCCTTTTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_g23.b1 MSMg01no433_g23.b1 CHROMAT_FILE:
MSMg01no433_g23.b1 PHD_FILE: MSMg01no433_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:31 2005
         (473 letters)



>mm_chr13_22864821_22865693
          Length = 873

 Score =  673 bits (348), Expect = 0.0
 Identities = 444/524 (84%), Gaps = 75/524 (14%)
 Strand = Plus / Minus

                                                                       
Query: 25  gactgatagcaaagaaaatgtgtacatgcaggtagacagagagacggacagactcactct 84
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 873 gactgatagcaaagaaaatgtgtacatgcaggtagacagagagatggacagactcactct 814

                                                                       
Query: 85  ctt--tctctctctctctctctcac----------------------------------- 107
           |||  ||||||||||||||||||||                                   
Sbjct: 813 ctttctctctctctctctctctcacacacacacacacacacacacacacacacacacaca 754

                                                                       
Query: 108 --------------------------cacacac------------agagagagagagaga 129
                                     |||||||            |||||||||||||||
Sbjct: 753 cacatacacacacacacacacacacacacacacagagagagagagagagagagagagaga 694

                                                                       
Query: 130 gagagagagagagagagagaattgaacaagacaattttgctagtgtaaagctcaaaggta 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gagagagagagagagagagaattgaacaagacaattttgctagtgtaaagctcaaaggta 634

                                                                       
Query: 190 tttcttttaaattttagattaaacaccagctcccaaactctcctctctgcacactcaaaa 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tttcttttaaattttagattaaacaccagctcccaaactctcctctctgcacactcaaaa 574

                                                                       
Query: 250 tatcctagagaccacaggaagaagggcaagtttcagatacctaaactgcaacattacctg 309
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 573 tatcctagagaccacaggaagaagggcaagtttcagagacctaaactgcaacattacctg 514

                                                                       
Query: 310 tctctgtccctgctttgttgactccagaatatgctattgtgcaaaatgtgctgtccagac 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tctctgtccctgctttgttgactccagaatatgctattgtgcaaaatgtgctgtccagac 454

                                                                       
Query: 370 ccctgtctagaattgcagcaacttcctccaaaaagtgtttgcatcctggacacatgtttt 429
           ||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ccaagtctacaattgcagcaacttcctccaaaaagtgtttgcatcctggacacatgtttt 394

                                                       
Query: 430 tctacctagaaagaaagaaatggttttgaagtatattaataagg 473
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tctacctagaaagaaagaaatggttttgaagtatattaataagg 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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