Query= MSMg01no433_i20.b1 MSMg01no433_i20.b1 CHROMAT_FILE:
MSMg01no433_i20.b1 PHD_FILE: MSMg01no433_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:40 2005
(393 letters)
>mm_chr13_105730229_105731021
Length = 793
Score = 629 bits (325), Expect = 0.0
Identities = 374/393 (95%), Gaps = 6/393 (1%)
Strand = Plus / Plus
Query: 4 ggaattcagtcagg---tttctcagtaatgggaagaacagctgatttaagtttaagaagc 60
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 204 ggaattcagtcaggggattt---agtaatgggaagaacagttgatttaagtttaagaagc 260
Query: 61 tgcgtggagaagagagatagtcattccttgacgaaaaggagagcccaccgacagccgggt 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tgcgtggagaagagagatagtcattccttggcgaaaaggagagcccaccgacagccgggt 320
Query: 121 tgttcatagagccgcgtgtccttacgcgagtgagtgaacataagaacagacacaggaaac 180
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tgtacatagagccgcgtgtccttacgcgagtgagtgaacatatgaacagacacaggaaac 380
Query: 181 ttgtgtcagaactggttcttgtctaacccttgcttctgtttctgcagtaggaagagacta 240
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 381 ttgtgtcagaactggttcttgtctgacccttgcttctgtttctgaagtaggaagagacta 440
Query: 241 gacactcagtcctagttgcttccctcacattctcctgggaatctgagtactcgccttccc 300
|| ||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||
Sbjct: 441 gagactcagtcctagttgtttccctcatattctcctgggaatctgagtgcttgccttccc 500
Query: 301 cacttcacactgcaccctgccgtgtgtgggcagggccactcggaagactggaattggagg 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 cacttcacactgcaccctgccgtgtgtgggcaggaccactcggaagactggaattggagg 560
Query: 361 aaaacttagaaaaatctgtccacattcctcagg 393
|||||||||||||||||| ||||||||||||||
Sbjct: 561 aaaacttagaaaaatctgcccacattcctcagg 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_i20.g1 MSMg01no433_i20.g1 CHROMAT_FILE:
MSMg01no433_i20.g1 PHD_FILE: MSMg01no433_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:40 2005
(394 letters)
>mm_chr13_105870720_105871513
Length = 794
Score = 754 bits (390), Expect = 0.0
Identities = 393/394 (99%)
Strand = Plus / Minus
Query: 1 atccaggcgatcaataaggtaccccagagtgctgcaaccccttggaatattgccagccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atccaggcgatcaataaggtaccccagagtgctgcaaccccttggaatattgccagccag 535
Query: 61 acatttgctcaattgaacttggattaaatggatacatcaagaatacaaagtgccaacttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 acatttgctcaattgaacttggattaaatggatacatcaagaatacaaagtgccaacttt 475
Query: 121 gaaaaataagaaaaataaaacttgaacaaataaatgaaattaaaagattgggtagtggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaaaaataagaaaaataaaacttgaacaaataaatgaaattaaaagattgggtagtggct 415
Query: 181 aaaactccctcctgtaaaactaaaggccaacaatatttatacagagcaggccagtctatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aaaactccctcctgtaaaactaaaggccaacaatatttatacagagcaggccagtctatt 355
Query: 241 ttgtaaagtttgtataagcaaaattccaaagccaggcaacaaaaaaggataaacatataa 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 354 ttgtaaagtttgtataagcaaaattccaaagccaggcaacaaaaaaagataaacatataa 295
Query: 301 acttactgtaaacatgggtataaaaagaattctaaactaaatctaatacttccaaaaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 acttactgtaaacatgggtataaaaagaattctaaactaaatctaatacttccaaaaagg 235
Query: 361 taaatattgcttagtttacctcatcaatcataag 394
||||||||||||||||||||||||||||||||||
Sbjct: 234 taaatattgcttagtttacctcatcaatcataag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
