BAC Information

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BAC

Clone NameMSMg01-433L05
Chromosome13 (Build37)
Map Location 86,783,985 - 86,784,334
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433L05.T7 (MSMg01no433_l05.b1)MSMg01-433L05.TJ (MSMg01no433_l05.g1)
ACCAG525422AG525423
length757741
length of high quality
(start - end)
415 (39 - 453)439 (69 - 507)
definitionCHROMAT_FILE: MSMg01no433_l05.b1 PHD_FILE: MSMg01no433_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:52 2005CHROMAT_FILE: MSMg01no433_l05.g1 PHD_FILE: MSMg01no433_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
AATATTTCTCTTTATATCCACAGATAATTGTATTTTTCCTCCAAATAACC
TTCTCATTTCAATGGAGACCATCAGAGAAAATGCAACAAATCAAAATGCT
TAGATAGCTTAGGATGCCCAGTTCCAGCTGATAAATATAAAACCCAGTTC
CTAAACCTCAGTATTATGAACCACAGTGAAAGAGGGGAAAAATATTGCAA
GGACATGAGAACAAGAAACATTCTACAAGATTTAGTCACCAAAAATGTTA
AGAGAGTCTACATTCTTAAAAACCTTATTACCATGGCTGCATAAACAAAT
CCTGAATAACAGCTACACTAGTGAACAATGTAACATGTAGTATCAACCTT
AGACAAAGAACTATGCTGAGCACAAGAGAAAGTCTCCTCATTAGAAAAGA
GGCTGTTGTATATGGGATGGATATACAATCACCTAACCCAGGCACTATTG
CATATTGCATAAAGATTTTGTTGAACGGACCCTGGAACACTTCCCTCTTG
CGAGACTATGCTAACGTCTTGCTACTACATAAAGTGGATGCTCCTAACTC
TTTATTTGTTTGGAAACACACGTTCCTCCCTTTGCGGCCTTTTTTCTCAT
CTTCTCTTCTTACCCTTTTTTTCTCCTCTCTCTCTCCTCCCAATTAAACC
TCTCTTTCTTTTTCACCCCCCTCCTCCTTTTTACTCCCGTCCCCCTCTCT
TATTCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTACCCTGGATATCCCAATTTATTCAGAAAT
TTTCATTTGTTATTTATATGTGACATATAAGGTTTTGTTGCTTGTATCCC
ACAAAATCCTTAAATAATAAATGTTTTGGTTTGAATCTTGTTTATTTGGT
AAGGTATACACTGGTGCACATATATAATGTATATTTTATATTATATATAA
TATCTTATATACTAATTAATGAACATTAATTATTTAAATAAAATATAATC
ATAGTATTTTTATATTTCTGTTATAATATATAAGCAGAGTATAAATATAA
TATAAAATATATGATAAAAATTGTATTACTATAAATGCATAATTGTGTAA
TTAATTATAGAAAATAATATAATAATGTAATATATTACTACACATTAATA
TGTTTATATAATATTTAACATATATGTTAACTGACCAAAAGAATGGATTC
TGAGAAGTAAATTCACAGCATTGAATGGGAAATATATTATTTATAGGAAA
GACCCANGACAATTATCATAATTACGTGAGAGTTTGCTCCATACTACCAA
ACATTCGGGAAAAATCTGGTCCCTATTCTATTTTGGCTATATAATATATT
TCCTCATTTACATTCTTTAACACTTGCGCTTAACACTTCCCTTTTTCTTT
CTCCTTCTTTTCCCCGCTCGCCTTTTTCCTTCATCCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_l05.g1 MSMg01no433_l05.g1 CHROMAT_FILE:
MSMg01no433_l05.g1 PHD_FILE: MSMg01no433_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:52 2005
         (439 letters)



>mm_chr13_86783985_86784823
          Length = 839

 Score =  590 bits (305), Expect = e-173
 Identities = 339/351 (96%), Gaps = 3/351 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaccctggatatcccaatttattcagaaattttcatttgttatttatatgtgacatat 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tttaccctggatatcctaatttattcagaaattttcatttgttatttatatgtgacatat 291

                                                                       
Query: 61  aaggttttgttgcttgtatcccacaaaatccttaaataataaatgttttggtttgaatct 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 290 aaggttttgttgcttgtttcccacaaaatccttaaataataaatgttttggtttgaatcg 231

                                                                       
Query: 121 tgtttatttggtaaggtatacactggtgcacatatata--atgtatattttatattatat 178
           |||||||||||||||||| | ||||||||| |||||||  ||||||||||||||||||||
Sbjct: 230 tgtttatttggtaaggtaaagactggtgcatatatatataatgtatattttatattatat 171

                                                                       
Query: 179 ataatatcttatatactaattaatgaacattaattatttaaataaaatataatcatagta 238
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 170 ataatatcttatatactaattaataaacattaattatttaaataaaatataatcatagta 111

                                                                       
Query: 239 tttttatatttctgttataatatataagcagagtataaatataatataaaatatatgata 298
           |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 110 tttt-atatttctgttataatatataaacagagtataaatataatataaaatatatgata 52

                                                              
Query: 299 aaaattgtattactataaatgcataattgtgtaattaattatagaaaataa 349
           |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 51  aaaattgtattactataaatacataattgtgtaattaattatagaaaataa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)