BAC Information

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BAC

Clone NameMSMg01-433M14
Chromosome13 (Build37)
Map Location 24,647,819 - 24,648,053
singlet/doubletsinglet
Overlap genenone
Upstream geneHist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
Downstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433M14.T7 (MSMg01no433_m14.b1)MSMg01-433M14.TJ (MSMg01no433_m14.g1)
ACCAG525488AG525489
length759841
length of high quality
(start - end)
235 (77 - 311)96 (66 - 161)
definitionCHROMAT_FILE: MSMg01no433_m14.b1 PHD_FILE: MSMg01no433_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:58 2005CHROMAT_FILE: MSMg01no433_m14.g1 PHD_FILE: MSMg01no433_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCATAATTTGCGGCGCTATACGAATACTACTTCAACAACACCGCGG
AATTCATGTATTTGCACAGCCTAGCTATAATGTCTCTTCCAGTATACTTT
AGGGCAAGCTACCTCATAAGCCTTACCATAAAAGGCTCATAAAGTTAAGA
CTCTCGAATCCCATAGCTGGGGGAGGGGTTACATGCACATGAGCGTGCCA
GGATGACCTTGTGTGAACAGAGGCCGCAGCAGGAGGAGGTCCTGAGTTTT
CTCTATCATTCTTCTCCTTTTCGCTGTAAGCTAGTCTCTTACTGAACCAG
AACCTCACTGTTTTGTATATGCNGATTGGCCAGCAAGCTCTTAGGATCAG
CCTGTATCTGTTCCCTAATACCGAGATTATAAGCACATGCCGTCATGTCT
GTTTTCCTTCCTTCCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTTCTTT
CTTCCTTCCCTCCCTTTTTTTCTTTCCCTCTTTTCTCCCCCCCTTTCCCT
TCTTTCCTTCCCTCCTTCTCTTCCCTTGTTCGGCCCCCTGTTTTTTCCCC
CTTCCCCCCCACTTTTTCCTCCCCCCCTTTTTTTCCCCCCTTTCTCTCTC
TCTTTCCCTCTTTTTTTTTTTTTCCCCCCTTCTTTTTTTTTTTTCCCTCT
TTTCTTTTCCCCCCCCTTCTTTTCTCCTATGCTTTCTTTCACCCCTCCCC
CGCCTCCTTTATCTTCCCCCCCCTTCTCCCCTCCTTTTTTTTCTCCCCCT
TTTTTCCTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGGCTTCTGTGGGAAAAGTGCAGCAGTAGCCATGC
ATCAGGGGTCAAGGAAGAGTCATAACACTATTTGGGGTGGGGTGGGGGCT
TCCAACTCCACTCCACATTACAAGGTTTTACAGCCCCCCTGCAGAGGCGC
CCTGTACACCTCATGTAGCAGCCTTATGAGGTGCACCTTATCCATAGCGC
CTTTAGGCTTCCCTGTCCACTTGCCCATGCCCCATGTGTATACCCCCGTC
CCTTTTTTTTTTTTCCCTGCCTGCTCTTCCTCCCTCCCTACCGCTTTTCT
TTCTTCCCCCCCCTTCTCCCTCCTTCCCCTCCCCCCTCCTCCCCCTCCTC
CCTCCTCCCCCTTCCTCCCCTCCCCCCTGCCCCTTCCTCTCCCCTCTTCC
CCCCCCTCTCTCCACCTCCCCCTCCTTCCCTTCCCCTCTTCTCTCTCCCT
CCTCCCTCTCTTCCCCCTTTCCTCTCCCTTCTCCCCCCCCCCCTCCCTCC
ATCCTCCCCTCCCCTCCTTCTTCCCCTTTCTTCCTCTTTTTTCCTTCCTC
CCCCTCCTCCCCTTCCCCTCTCCCTCTCCCCTTCCCCCCTTTCCTTCCCC
TTTCTCCCTCCTCCCTCCCCCTATCTTCCTCCCCTCCTTTCCCCCCATCC
CTCTTCTTTCCTTTTTACCCCCCCCCCCCCCTTTTCTTTCCCTTTTCCCT
CCTCCCCTTTTCCCCCTTTCCCCTTTCCCCTCCCTTCTCCCCTTTTCCCT
TTCCTCTTCCCTTCCACCCCTTTCCACTTATCTTTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_m14.b1 MSMg01no433_m14.b1 CHROMAT_FILE:
MSMg01no433_m14.b1 PHD_FILE: MSMg01no433_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:58 2005
         (235 letters)



>mm_chr13_24647619_24648253
          Length = 635

 Score =  408 bits (211), Expect = e-118
 Identities = 229/235 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatgtctcttccagtatactttagggcaagctacctcataagccttaccataaaaggc 60
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ataatgtcttttccagtatactttagggcaagctacctcagaagccttaccataaaaggc 260

                                                                       
Query: 61  tcataaagttaagactctcgaatcccatagctgggggaggggttacatgcacatgagcgt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacaaagttaagactctcgaatcccatagctgggggaggggttacatgcacatgagcgt 320

                                                                       
Query: 121 gccaggatgaccttgtgtgaacagaggccgcagcaggaggaggtcctgagttttctctat 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaggatgaccctgtgtgaacagaggccgcagcaggaggaggtcctgagttttctctat 380

                                                                  
Query: 181 cattcttctccttttcgctgtaagctagtctcttactgaaccagaacctcactgt 235
           ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 cattcttctcctttttgctgtaagcttgtctcttactgaaccagaacctcactgt 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)