XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATNNGNGGAATTCA
CAAAATATCTTGTTATTTTCCCCCAACTATTCCATTATAACTTCTATGAA
CCATGCTCAACTTTCTTTCAATATCTACCTTAATTAAAATGATGGTGTTA
TAAAAAACAGAATCTGAGACTTTTTTACTTTGTGAGTATTGANANAAGCA
AATGCATAACTAGGAAAAAAATACTACAAGAAAAGGCGAACTAGGTAGGG
GGCTGGCGGGGGGGGGGGGCGGGGGGGGGGGCGGGGGGGGGGGGGGGGGG
GGGCGTGGGCGGCGCNNNNNNNNNCCTCTTATANNNAAATTTTTTATATN
TTCCCTCCAAAAAAAAAAAATCTTGGGCTGAATGGCGATAAAATAAAGGG
TGTTCTCCTTCTTTCTTCTCCCAATTTCTTCCTTTTTTTTTTCTCTTCTT
CCCCTCCTTTCCTCCTTCTTCTTTCCTTCCCTTCTCCCTTTCTCTTTTTT
TTTTTCCCTTTCTCTCTTTTTTCTTTTCCTTCTCTTTCTTTTTTTCTTTT
ATTCCTCTTCCTTCCCCCTCCCCTTTTCTTTTTTTCCCCCCCCTTCTCCC
TTCCTCCTTTTTCTCTCTTTCTTTTCCCTTTTTTCTTTCCCTCTTCCTCC
TTTTCCCTTCTTTCTTTTCCCCCTCTCCTTTTTCCTTCCCCTCCTTGTGT
GTCTG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTACTCATAACTGTAGAGCCATGTCTTCAT
CCCTTACTTACATTTTACTACTCCCAATTTCCCCTAAAGCATTATTGTCG
TTTGCAATGCAAATTAATTTTTTATTTCTTATAGTTATTTATGGGAATGC
CTAAATGCTAAGCTCTGTGAGCTGAGTTCCAAGTCTAGTGCATGAATGAT
GCACAGTAAGTACTATGGATCCCATAACAGAACCAAGTACCTGTTCTGTT
GGTAATATGCCATTTATGGAAAGAAAGCTAAACGTACTCATGCCAAAGGC
TGTCTCAGATACTGTCTCCCACTGCACACTCGCAGTCAAGTCAAGGCCAT
TTGTACGTGACACATTGAGGTACACACTCCTGTTGGATTCTTCAACATCT
ATAGAGGTGGCACTAAAAGAAAAACAAATGGATTTTGGAGAGCAGAAGAG
AATAATTTCTAAATATTTAAAATACAAAATACACTGCCAGCATATTATTT
TATATAGTTGTAAACCTGTACATTCCTATGAAACCCACCAATTTTATGCA
GTGGAAGACTACATTCTAGTATTCCCATGTACCTCCTTAATGACATCCCT
TTTTATAATAAATTCACAATGCTTCTCCCCCCTATTTTTTTCCTAGTTTA
TACTTCCCGCCTCCTCTTTATCCTTCTCCCCCTC

Query= MSMg01no433_n05.b1 MSMg01no433_n05.b1 CHROMAT_FILE:
MSMg01no433_n05.b1 PHD_FILE: MSMg01no433_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:01 2005
         (117 letters)



>mm_chr13_81789689_81790205
          Length = 517

 Score =  203 bits (105), Expect = 3e-57
 Identities = 114/117 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattcacaaaatatcttgttattttcccccaactattccattataacttctatgaacca 60
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaattcacaaaagattttgttattttcccccaactattccattataacttctatgaacca 258

                                                                    
Query: 61  tgctcaactttctttcaatatctaccttaattaaaatgatggtgttataaaaaacag 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 257 tgctcaactttctttcaatatctaccttaattaaaatgatggtgttataaaagacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no433_n05.g1 MSMg01no433_n05.g1 CHROMAT_FILE:
MSMg01no433_n05.g1 PHD_FILE: MSMg01no433_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:01 2005
         (477 letters)



>mm_chr13_81633105_81633981
          Length = 877

 Score =  915 bits (473), Expect = 0.0
 Identities = 476/477 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtactcataactgtagagccatgtcttcatcccttacttacattttactactcccaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtactcataactgtagagccatgtcttcatcccttacttacattttactactcccaatt 260

                                                                       
Query: 61  tcccctaaagcattattgtcgtttgcaatgcaaattaattttttatttcttatagttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccctaaagcattattgtcgtttgcaatgcaaattaattttttatttcttatagttatt 320

                                                                       
Query: 121 tatgggaatgcctaaatgctaagctctgtgagctgagttccaagtctagtgcatgaatga 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgggaatgcctaaatgctaagctttgtgagctgagttccaagtctagtgcatgaatga 380

                                                                       
Query: 181 tgcacagtaagtactatggatcccataacagaaccaagtacctgttctgttggtaatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacagtaagtactatggatcccataacagaaccaagtacctgttctgttggtaatatg 440

                                                                       
Query: 241 ccatttatggaaagaaagctaaacgtactcatgccaaaggctgtctcagatactgtctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatttatggaaagaaagctaaacgtactcatgccaaaggctgtctcagatactgtctcc 500

                                                                       
Query: 301 cactgcacactcgcagtcaagtcaaggccatttgtacgtgacacattgaggtacacactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactgcacactcgcagtcaagtcaaggccatttgtacgtgacacattgaggtacacactc 560

                                                                       
Query: 361 ctgttggattcttcaacatctatagaggtggcactaaaagaaaaacaaatggattttgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgttggattcttcaacatctatagaggtggcactaaaagaaaaacaaatggattttgga 620

                                                                    
Query: 421 gagcagaagagaataatttctaaatatttaaaatacaaaatacactgccagcatatt 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagcagaagagaataatttctaaatatttaaaatacaaaatacactgccagcatatt 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)