BAC Information

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BAC

Clone NameMSMg01-434O21
Chromosome13 (Build37)
Map Location 67,983,980 - 67,984,634
singlet/doubletsinglet
Overlap genenone
Upstream geneUqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507
Downstream geneLOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434O21.T7 (MSMg01no434_o21.b1)MSMg01-434O21.TJ (MSMg01no434_o21.g1)
ACCAG526352AG526353
length740762
length of high quality
(start - end)		659 (36 - 694)457 (71 - 527)
definitionCHROMAT_FILE: MSMg01no434_o21.b1 PHD_FILE: MSMg01no434_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:29 2005CHROMAT_FILE: MSMg01no434_o21.g1 PHD_FILE: MSMg01no434_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTTC
TCTTTCACATGGCCCATCTACCCTCTCTTGGCTAGCGGTTGGCCGTTCGG
CTCCTTAAACCAACAGAGAATGCCTTAGGCAGATGAGGAAGAACAGAGAA
GCAATTTATAACAACACTCTCCCAACATGTGAATGTGTCGCCAACATCTG
TTCCGGGATATTAGCTTGCCGCGCAGCAGGTAAACCATGAAGCCATGTTG
TGCTTTGCCAGTGCTCTCTACCATGGCAGCTGGGACTCAGTCATTTCACC
TTTGGCAGTAGTGACTCTAATGTAGTTGGTACATTATATTCTATGAAACA
TAAGAAAACAATAACAAACGAAAATTTAAATGTTTTCCAATTATCTTGGA
ATGAAAAGATGAATTTGTATGTGAAATCAATTTTCTTAAGGCAAAAGCTT
ATTTTCATCAAGTGTAAATTGACACAGCCAATAGCCTTTAAATATATCCT
TAAAAACACTATTATATCAAATACACAATTCTAATGAATTGCACATGCAC
TAGATATTAAAAAGTAATTTCTCAACAAAAGAAAATTATATGAAACAGAT
TATAAAGAAATTCTGTAAATCTATTCGACTGGGTCATGAGAAGAAAGCAT
AGACCTTGACTGCAAAAAGAAGGGTTTTAAGGACTTTATCGGAAATATGA
AATGCTAACAGACTCATTTTTCCATTTCTGTGCCTTAAGA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGAGATATCATTTCATTTCAAGGTATTTA
ATATCAGGCACCTATGTCAGAACCATTTCTATCTATAATTTCATCTTCTT
CAAAATTTAGAATTGTGACTGCAAGTATGTTGACTATTCGGTATTTATGT
TATTAATTTTTGCTATTGATTTCATTTAATTTCAGAAACTGCTGTCATTC
AGAGATGTGGCCATTGATTTCTCTGCAGAGGAGCGTGAATGTCTGGACTC
TGCTCAGTGGAATTTGTATAAGGAAGTGATGTTGGAGAATTACAGCCACC
TTGTGTTCCTGGGTAAGGATCACTTCCATTGTGAACTCTTATTTCACTGT
CAAAAGGAACTGCCTCCATTTGTAGGGTAACTCATGTTGGAGAGTTTGTG
CCTTCCAACAATGTAGCTCATGTGCCTGCCTTTAAAGAGAAAAAGATGGA
ATGTGATGGGGCTAAAAAATATTTTAGAGTATGCTTAGCCTGTTTGTGGA
GGTATGCACCCTCCATTGTAGTGGCCTTGTTAGTANCTCGGGAGCAAGAG
GCTGGAACACATGTTAAAGAAAATGCCTTCACCCTCTGCGTTAATACTTT
TCCTTGAAAGGAGGCTCAAGGAACCCAAGGTGTAAAAGAATCTCCAAAAT
ACATCTCTTTAGAAAGGGGTTAATCTAAAAATTTTTCTGAGTCGGCAAAA
AACCCTCCCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_o21.b1 MSMg01no434_o21.b1 CHROMAT_FILE:
MSMg01no434_o21.b1 PHD_FILE: MSMg01no434_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:29 2005
         (659 letters)



>mm_chr13_67983776_67984834
          Length = 1059

 Score = 1243 bits (643), Expect = 0.0
 Identities = 652/655 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttctctttcacatggcccatctaccctctcttggctagcggttggccgttcg 64
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gaattcctttctctcccagatggcccatctaccctctcttggctagcggttggccgttcg 800

                                                                       
Query: 65  gctccttaaaccaacagagaatgccttaggcagatgaggaagaacagagaagcaatttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gctccttaaaccaacagagaatgccttaggcagatgaggaagaacagagaagcaatttat 740

                                                                       
Query: 125 aacaacactctcccaacatgtgaatgtgtcgccaacatctgttccgggatattagcttgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aacaacactctcccaacatgtgaatgtgtcgccaacatctgttccgggatattagcttgc 680

                                                                       
Query: 185 cgcgcagcaggtaaaccatgaagccatgttgtgctttgccagtgctctctaccatggcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cgcgcagcaggtaaaccatgaagccatgttgtgctttgccagtgctctctaccatggcag 620

                                                                       
Query: 245 ctgggactcagtcatttcacctttggcagtagtgactctaatgtagttggtacattatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgggactcagtcatttcacctttggcagtagtgactctaatgtagttggtacattatat 560

                                                                       
Query: 305 tctatgaaacataagaaaacaataacaaacgaaaatttaaatgttttccaattatcttgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctatgaaacataagaaaacaataacaaacgaaaatttaaatgttttccaattatcttgg 500

                                                                       
Query: 365 aatgaaaagatgaatttgtatgtgaaatcaattttcttaaggcaaaagcttattttcatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aatgaaaagatgaatttgtatgtgaaatcaattttcttaaggcaaaagcttattttcatc 440

                                                                       
Query: 425 aagtgtaaattgacacagccaatagcctttaaatatatccttaaaaacactattatatca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aagtgtaaattgacacagccaatagcctttaaatatatccttaaaaacactattatatca 380

                                                                       
Query: 485 aatacacaattctaatgaattgcacatgcactagatattaaaaagtaatttctcaacaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatacacaattctaatgaattgcacatgcactagatattaaaaagtaatttctcaacaaa 320

                                                                       
Query: 545 agaaaattatatgaaacagattataaagaaattctgtaaatctattcgactgggtcatga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agaaaattatatgaaacagattataaagaaattctgtaaatctattcgactgggtcatga 260

                                                                  
Query: 605 gaagaaagcatagaccttgactgcaaaaagaagggttttaaggactttatcggaa 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaagaaagcatagaccttgactgcaaaaagaagggttttaaggactttatcggaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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