Query= MSMg01no435_j13.b1 MSMg01no435_j13.b1 CHROMAT_FILE:
MSMg01no435_j13.b1 PHD_FILE: MSMg01no435_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:24 2005
(477 letters)
>mm_chr13_54251714_54252590
Length = 877
Score = 880 bits (455), Expect = 0.0
Identities = 472/479 (98%), Gaps = 4/479 (0%)
Strand = Plus / Minus
Query: 1 gtaaaactttctcctcaaccatgcctaggagcactggcactcaaaaacccaggagtggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtaaaactttctcctcaaccatgcctaggagcactggcactcaaaaacccaggagtggca 435
Query: 61 cgtatgagctcccttcccagggactcactcagcctctctgagcctagctgctgatttgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cgtatgagctcccttcccagggactcactcagcctctctgagcctagctgctgatttgac 375
Query: 121 tgtcctaagatacctatgggtcacttgtttctgctggcttctgacaccctccatatctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 374 tgtcctaagatacctatgggtcacttgtttctgctggcttctgacaccctctatatctga 315
Query: 181 ctcctaaccctagagtctacctcttcagtttcatccctccatctgctctacatactaaga 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 314 ctcctaaccctagagtctacctcttcagtttcatccctccgtctgctctacatactaaga 255
Query: 241 tttcaaaagttcagagttttaacaggcaggaactctggagcctcactggtgagtcagttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tttcaaaagttcagagttttaacaggcaggaactctggagcctcactggtgagtcagttg 195
Query: 301 aattggtgagctcagggttcagtgtgtcctgtgagttctcatgggagatacggaaaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 194 aattggtgagctcagggttcagtgtgtcctgtgagttctcatgggagatacgg--aaaaa 137
Query: 361 aaaccc--atctgttcaccccagatgtggcaccaatggcagactaaggaaatgcttatac 418
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 aaaccccaatctgttcaccccagatgtggcaccaatggcagactaaggaaatgcttatac 77
Query: 419 tgtgctgccgtctaacttggcaaaccaatgaggttttgttcttgttgtcgttactcaca 477
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 76 tgtgctgccgtctaacttggcaaaccaatgaggttttgttcatgttgtcgttactcaca 18
Score = 240 bits (124), Expect = 2e-67
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 13 cctcaaccatgcctaggagcactggcactcaaaaacccaggagtggcacgtatgagctcc 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 cctcaaccatgcctaggagcactggcactcaaaaacccaggagtggcacgtatgagctcc 796
Query: 73 cttcccagggactcactcagcctctctgagcctagctgctgatttgactgtcctaagata 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cttcccagggactcactcagcctctctgagcctagctgctgatttgactgtcctaagata 736
Query: 133 ccta 136
||||
Sbjct: 735 ccta 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_j13.g1 MSMg01no435_j13.g1 CHROMAT_FILE:
MSMg01no435_j13.g1 PHD_FILE: MSMg01no435_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:24 2005
(497 letters)
>mm_chr13_54118413_54119308
Length = 896
Score = 926 bits (479), Expect = 0.0
Identities = 491/495 (99%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 1 ctctctccagggccatatattttccttacctccttgttgttgggcttggatatatgaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctctccagggccatatattttccttacctccttgttgttgggcttggatatatgaact 260
Query: 61 gaactagccaatgaaatcttagtaggtgggatacaagaagcctgaagtgtgtttttgctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gaactagccaatgaaatcttagtaggtgggatacaagaagcctgaagtgtatttttgctt 320
Query: 121 gacttcatctcctatgtccacgtcttgtgctgtcagaggaccttcctgtgtgcggcctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttcatctcctatgtccacgtcttgtgctgtcagaggaccttcctgtgtgcggcctag 380
Query: 181 tccagaactaatgagtgtggctatgtaaactcagcccacgattggcagccaaatccagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagaactaatgagtgtggctatgtaaactcagcccacgattggcagccaaatccagat 440
Query: 241 ggtctgcagccttaggcaaagcagcccagcatctctactttggatgagcccaaaccgatg 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcctgcagccttaggcaaagcagcccagcatctctactttggatgagcccaaaccgatg 500
Query: 301 acagatgggtcagtgtaagaacgagcactcctcaattggctgttacacagcaaaagccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagatgggtcagtgtaagaacgagcactcctcaattggctgttacacagcaaaagccag 560
Query: 361 atgctatttttgtgttcctccttttagccagttctaaatatatttttacacccaactatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgctatttttgtgttcctccttttagccagttctaaatatatttttacacccaactatg 620
Query: 421 acataaaagaaacatttttttctcttattttctttacattttcctctcctgttcgtcgta 480
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 acataaaagaaacatttttt-ctcttattttctttacattttcctctcctgttcatcgta 679
Query: 481 agtttcatcatttct 495
|||||||||||||||
Sbjct: 680 agtttcatcatttct 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space: 431482
Effective search space used: 431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
