BAC Information

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BAC

Clone NameMSMg01-436D06
Chromosome13 (Build37)
Map Location 3,635,812 - 3,636,296
singlet/doubletsinglet
Overlap geneAsb13
Upstream geneLOC667375, LOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2
Downstream geneCalml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436D06.T7 (MSMg01no436_d06.b1)MSMg01-436D06.TJ (MSMg01no436_d06.g1)
ACCAG527326AG527327
length750734
length of high quality
(start - end)		485 (76 - 560)506 (87 - 592)
definitionCHROMAT_FILE: MSMg01no436_d06.b1 PHD_FILE: MSMg01no436_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:13 2005CHROMAT_FILE: MSMg01no436_d06.g1 PHD_FILE: MSMg01no436_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAAGAGATCTCGTTGACAAACAAGCTTGAAAGCATACC
GGAGGCCGAAAAAGTTTAAAGAAAATAATAGTCAAGTAATAAACACGTTT
ATGAACAAAACAGCACGTTAATATCTTTTCTGTAACATGGCCCTGTGAAA
AGTCACCTCCTTCACAAGAAAACTAAGGTGGCTGGTTGCCAATGAAGCCT
TTTCTCAAGTTCTTCAGAATGAAGAAAATAAGCCAGGCCTGAAAGTTCTT
ACTGGTAATCTCAGCTAGGTGGCCCAGATACGCTGTGAATTTAAGGCCAG
CTCAGGCTACTACCAAGGACCTCTCTCAAAAAGTAAAAAAACAAACAAGA
AAAGATACTTGGCTTGAAGCCCAGGCTCGCTGTGTTTTGTGATCGAACTG
TGGGAACTAAGGGAGTGTACCCTCACTTAATAAACACACCAGGATGACTA
AAGGCAGGGAAGGAGGGCGATCACGTGTTCTAGGTGTTCTAAGTGAGCTC
CTTTTCAGCAGGGAGAGGAGTCGCTCTTTCTGCGCCCCGCCCGCCTGCCC
GCCGGGTTTCCTTGTTCTTTTAACTTAGNTGCCAATCTGTTTCACTTTCC
CCTACTCTCTTTCACTTTCTTTTCTTTACTTAACTTTTCAGTTGCTGCTC
CCTGCCCCTCTTTGAAGGCAACATTTTATTTTATTTTTTACACCCTTGGA


AACCCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCACTCACCTGGA
ACCTTCACCCCTACTGACTAGCTTTCATAGTGTTGGAAGGTGCTATGCAT
GCCAGCCAGAGGAGAAAAATAATGTTCGTTCTTCCACAGTTGGGAGCCTA
GTGAGCTCCAGTGACAATCTGCCTGGCATGATAAGCCCACTGTTGCAAAA
GTGGATGAATCATGTCTGAATAAGCAAACACACTTTCTGATTGGATTTAA
GGAGACTGAGTCACAAGTACGAACCAACTCCTGACACTATTATTATTATT
ATTATTATCATTATTTTTTTTTATTTTGGTTTTTCGAGACAGGGTTTCTC
TGTATATCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC
GAACTCAGAAATCCGCCGGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGC
GTGCGCCACCAGGCCCGGCTAGACACCTGACACTATTATCAGGGGCAATA
ACCTGGGCTAGAGAGGTCTTAGACTCTAAGGGAGGATCTACTTCTGTTCT
GAGGAATGAACACAGAATGTAATCCACTCCTAATGTCTTATCACTAGATC
TGTAGATCACTGCATCTCTCAACTTCAACTGAGGTTTTTTGTTTGTTTGT
TGGGTTGTNGGGNCNNCCCNNNNATATTTTCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_d06.b1 MSMg01no436_d06.b1 CHROMAT_FILE:
MSMg01no436_d06.b1 PHD_FILE: MSMg01no436_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:13 2005
         (485 letters)



>mm_chr13_3635612_3636496
          Length = 885

 Score =  930 bits (481), Expect = 0.0
 Identities = 484/485 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacaaacaagcttgaaagcataccggaggccgaaaaagtttaaagaaaataatagtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacaaacaagcttgaaagcataccggaggccgaaaaagtttaaagaaaataatagtcaa 260

                                                                       
Query: 61  gtaataaacacgtttatgaacaaaacagcacgttaatatcttttctgtaacatggccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaataaacacgtttatgaacaaaacagcacgttaatatcttttctgtaacatggccctg 320

                                                                       
Query: 121 tgaaaagtcacctccttcacaagaaaactaaggtggctggttgccaatgaagccttttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaaagtcacctccttcacaagaaaactaaggtggctggttgccaatgaagccttttct 380

                                                                       
Query: 181 caagttcttcagaatgaagaaaataagccaggcctgaaagttcttactggtaatctcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagttcttcagaatgaagaaaataagccaggcctgaaagttcttactggtaatctcagc 440

                                                                       
Query: 241 taggtggcccagatacgctgtgaatttaaggccagctcaggctactaccaaggacctctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggtggcccagatacgctgtgaatttaaggccagctcaggctactaccaaggacctctc 500

                                                                       
Query: 301 tcaaaaagtaaaaaaacaaacaagaaaagatacttggcttgaagcccaggctcgctgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaaaagtaaaaaaacaaacaagaaaagatacttggcttgaagcccaggctcgctgtgt 560

                                                                       
Query: 361 tttgtgatcgaactgtgggaactaagggagtgtaccctcacttaataaacacaccaggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 tttgtgatcgaactgtgggaactaagggagtgtaccctcacttaataaacataccaggat 620

                                                                       
Query: 421 gactaaaggcagggaaggagggcgatcacgtgttctaggtgttctaagtgagctcctttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gactaaaggcagggaaggagggcgatcacgtgttctaggtgttctaagtgagctcctttt 680

                
Query: 481 cagca 485
           |||||
Sbjct: 681 cagca 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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