NGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGTCTTGTACAAGACACACAAGAGCAGGGTAGTGACTTCCTC
TTATCCTCTTGCAGTGTTCTGGTCAAATTGAAGAGCTTGGCTTATTTAAG
TATTGCCATTTTTTTTTCTCTACTGGTCAAAATTATAGGAAGACTCAGGT
GCTGTCAGCCTGAGATAAATCTCTGGAAGATCAAGTATAGTAGTAACACA
TAGTCTCTTTCCTCTTCATATCCTCACTGCCTACACCATTAATAAGCACT
AATAAACTAGTTCTTAGAAAAAATAAAGGTCTGTCTTATGTGGATACTCA
TGACTTCCTCATGCAAGACAATCATTTTCCTGCTAATAATTTCAACTCAA
GTCTGTTGACCCCTAAAACAAAACAGCAGCAGCAACCCCACCTCCACCCC
AACTCCGCCACTGTCTCTTTTAGTCTATTCGATATTATGTTTAGTAGGAC
AGAACTATTTTCCATGCTCACCTTTTTTGTCTTTTCATTTATATGTTATT
AAATTCATCCAAATTTGGCTTTCACTCATCCTGAGAATTTTCTTGAAACT
ACTTATTTATGGTCACATCAATTATTATGTCTACATGTCTTTGGCTGTCC
TGTAAACTGACCTCTTTTTTTTTATTAGGTATTTAGCTCATTTACATTTC
CAAAGCTATACCAAAAGTCCCCCATATCCACCACCCCCATTCCCTTGGCA
CCCAN

NCCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATATAGTCTTTTCTACAT
AAGAAGTTTCAAGATAGACCCTTATTGAGAAAGCAACCAAGCAAGCAAGC
AAGCAAGCAAGGTAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGG
AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGTNTTTTTTTTTTTT
TTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNNNTT
TTTTTTTTTTTTTNTTTTTTTTTTTTTTCTCTCTCCTCTTTCCTTTTTTT
CTTTTCTCTCCCTTTTTTTCTTTTTTTTTTTTCTCCCTCCTTTTCTTTCC
TCTTTCTTTTTCTCTCTTTTTTTTCCCTTTTTTTCTCCTTTCCTTTCTTC
CNCTCTTTTTTTTCTTTTTCTCTTTTTTTTTTTTTTTTTTTTTTTCCTTT
CTTTTTTTTTTTTTCTTCTTTTTTTCTCTCCTTCTTCTCTTTTTTTTTTT
CTCCTCCTTCTTTTTTTTTTTTCCCTCTCCTCTTTTTCTTTTTTTCCTTT
TTCTTCCTTCTTCTTTTTTTTCTTTTCCTCCCCTCTTCCTTTTTTCTCTT
TTTTTTTTTTATTCTTCCCTCCCTCTTTTTCTTTTTCTTCTAATTTTCCT
CCTCTTTTTTTTTTCTTTTTTTTTCTCCCCTCTTTATTCATTCTCTCTTA
TTTATTTTTCCTTTTCCNCCTTTCTCTTTTTCTTTTTTTTCCCCT

Query= MSMg01no436_f04.b1 MSMg01no436_f04.b1 CHROMAT_FILE:
MSMg01no436_f04.b1 PHD_FILE: MSMg01no436_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:22 2005
         (649 letters)



>mm_chr13_116287502_116288550
          Length = 1049

 Score = 1208 bits (625), Expect = 0.0
 Identities = 641/647 (99%), Gaps = 2/647 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtcttgtacaagacacacaagagcagggtagtgacttcctcttatcctcttg 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtcttgcaaaagacacacaagagcagggtagtgacttcctcttatcctcttg 264

                                                                       
Query: 65  cagtgttctggtcaaattgaagagcttggcttatttaagtattgccatttttttttctct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagtgttctggtcaaattgaagagcttggcttatttaagtattgccatttttttttctct 324

                                                                       
Query: 125 actggtcaaaattataggaagactcaggtgctgtcagcctgagataaatctctggaagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actggtcaaaattataggaagactcaggtgctgtcagcctgagataaatctctggaagat 384

                                                                       
Query: 185 caagtatagtagtaacacatagtctctttcctcttcatatcctcactgcctacaccatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caagtatagtagtaacacatagtctctttcctcttcatatcctcactgcctacaccatta 444

                                                                       
Query: 245 ataagcactaataaactagttcttagaaaaaataaaggtctgtcttatgtggatactcat 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaagcactaataaactagttcttagaaaaaataaaggtctgtcttatgtggatactcat 504

                                                                       
Query: 305 gacttcctcatgcaagacaatcattttcctgctaataatttcaactcaagtctgttgacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacttcctcatgcaagacaatcattttcctgctaataatttcaactcaagtctgttgacc 564

                                                                       
Query: 365 cctaaaacaaaacagcagcagcaaccccacctccaccccaactccgccactgtctctttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctaaaacaaaacagcagcagcaaccccacctccaccccaactccgccactgtctctttt 624

                                                                       
Query: 425 agtctattcgatattatgtttagtaggacagaactattttccatgctcaccttttttgtc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtctattcgatattatgtttagtaggacagaactattttccatgctcaccttttttgtc 684

                                                                       
Query: 485 ttttcatttatatgttattaaattcatccaaatttggctttcactcatcctgagaatttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 ttttcatttatatgttattaaattcatccaaatttggctttcactcatcctaagaatttt 744

                                                                       
Query: 545 cttgaaactacttatttatggtcacatcaattattatgtctacatgtctttggctgtcct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttgaaactacttatttatggtcacatcaattattatgtctacatgtctttggctgtcct 804

                                                          
Query: 605 gtaaactgacctcttttttttt--attaggtatttagctcatttaca 649
           ||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 805 gtaaactgacctctttttttttttattaggtatttagctcatttaca 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)