BAC Information

Click to search

BAC

Clone NameMSMg01-437P15
Chromosome13 (Build37)
Map Location 85,897,082 - 85,897,413
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
Downstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437P15.T7 (MSMg01no437_p15.b1)MSMg01-437P15.TJ (MSMg01no437_p15.g1)
ACCAG528681AG528682
length761764
length of high quality
(start - end)		603 (43 - 645)588 (73 - 660)
definitionCHROMAT_FILE: MSMg01no437_p15.b1 PHD_FILE: MSMg01no437_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:33 2005CHROMAT_FILE: MSMg01no437_p15.g1 PHD_FILE: MSMg01no437_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCATAATGCTGGCTTTATTTCACTGGTTGAAACTTGCCTTGTGAAA
ATAGTCTTTTCTATAAAGACAATTGCTAAAGCTGTCAACAGCAATAGCTG
GACACCATAGATACTTCAGGGTATTGTAGGGAGTAGTTCTGATGCTTTGA
GCAGGAATCTGAAGGTCCTGTTCAACATTGGTTCTTTCGTTTCGTTTTGT
TTTGTTTTGTTTTTTATTGGATATTTTCTGTATTTACATTTCAAATGTTA
TCCCGGTTCCAGGTTTCTCCTCCGGAACCCCCCTATCCAACCCCCCTCTC
CCTGCTTCTATGAGGATACTCCCCCTCCCACCTACTCCCTCCCTCCTCAC
CTTCCTGGTGTTCCCCTACAATGAGAAATCAAGCCTTCACAGGGCCAAGG
GCATCTCCTCCTATTGATGCCAGACAATGCCATCCTCTGATACATAGGCG
GCTGCAGCCATGGATCCCTCCATGTGTACTCTGGTTGGTGATTTATTCCC
TAGAAGATCTGGGGGTATCTGGTTGGTTGATATTGTTTTTCTTCCTATTG
GGTTGCAAACCCCTTCAGCTCCTTCAGTCCTTTCTCTAATTCCTCCATTT
GGGAGCCCATGCTAAGTCCAATGGTTGGCTGCAAGCATCCCCTCTGAATT
TGTCCGGCTCTGGGAGAGCCTCTCAGAAGACAGTTATAATATGCTCCCTG
TCCCCAACACN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCTCAGACCCTTTATCATTTATATGT
AGAGCTACTTTTATTTTTATTTTTAGTTATTCTTGTATCCAAGCACTTCA
ATGAAAGTGTTTATTAGGTATAAGAATTCTCTGGTAGCGTCTTTGTGGTT
GTTTATATATACATTATCATATCATCTGCAGATAGACATAATTAGACCTC
TTCTTTTCCGAGTTATATCTCCTGATTTTTTTTTTTACTTGTCTTATTGT
TCTAACTAGAACTTCAAGTAGGGCTTGATTAGCCAGAAAGAGTGGGCAGC
CTTGTCTTGTTCCTGGAGTTTAGTGGAATTGCTCTGTATTTCTATTTAAT
TTGATGTTGCCAATCAGCTTGCTGTATAATGCCTTTATTATGTTCAGATA
TGTCTCTGTATACCTGATCTCTCCAAGACTTTTATTAACATAGGATATTG
GATTTTGTCAAAGGCCCCTTTGGCATCTAATGAAATGATTATGGAATTTT
TTCTTTTGGTTTGTTTAGATGGTGGAATATATTGACCGATTTTTATATAT
TAAGCCATCCTTGCATCCCTGTAATGAAGCCTACTTGGTCATGGTGGATG
ATCTTTTTGATGTGTTCTTAAATTCTGCTTGCAAATACTTTATTTAATAT
TTTTGCCTCAATGGTCTTGGGGTAAAATGCTCTGAAATTCCTTTCTTTAT
TGAGTTTTTGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_p15.b1 MSMg01no437_p15.b1 CHROMAT_FILE:
MSMg01no437_p15.b1 PHD_FILE: MSMg01no437_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:33 2005
         (603 letters)



>mm_chr13_85897082_85898084
          Length = 1003

 Score =  574 bits (297), Expect = e-168
 Identities = 324/333 (97%), Gaps = 2/333 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactcataatgctggctttatttcactggttgaaacttgccttgtgaaaatagtc 64
           |||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 332 gaattcactcataaggctggctttatttcactgtttgaaacttgcctagtgaaaatagtc 273

                                                                       
Query: 65  ttttctataaagacaattgctaaagctgtcaacagcaatagctggacaccatagatactt 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 272 ttttctataaagacacttgctaaagctgtcaacagcaatagctggacaccacagatactt 213

                                                                       
Query: 125 cagggtattgtagggagtagttctgatgctttgagcaggaatctgaaggtcctgttcaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 cagggtattgtagggagtagttctgatgctttgagcaggaatctgaaggtcctgttcaac 153

                                                                       
Query: 185 attggttctttcgtt-tcgttttgttttgttttgttttttattggatattttctgtattt 243
           |||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 152 attggttctttc-ttatcgttttgttttgttttgttttttattggatattttctatattt 94

                                                                       
Query: 244 acatttcaaatgttatcccggttccaggtttctcctccggaacccccctatccaaccccc 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 93  acatttcaaatgttatcccggttccaggtttcacctccggaacccccctatccaaccccc 34

                                            
Query: 304 ctctccctgcttctatgaggatactccccctcc 336
           |||||||||||||||||||||||||||||||||
Sbjct: 33  ctctccctgcttctatgaggatactccccctcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |