BAC Information

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BAC

Clone NameMSMg01-438H08
Chromosome13 (Build37)
Map Location 36,934,462 - 36,934,797
singlet/doubletsinglet
Overlap genenone
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590, LOC666758, Nrn1
Downstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438H08.T7 (MSMg01no438_h08.b1)MSMg01-438H08.TJ (MSMg01no438_h08.g1)
ACCAG529048AG529049
length828783
length of high quality
(start - end)
353 (41 - 393)379 (76 - 454)
definitionCHROMAT_FILE: MSMg01no438_h08.b1 PHD_FILE: MSMg01no438_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:15 2005CHROMAT_FILE: MSMg01no438_h08.g1 PHD_FILE: MSMg01no438_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATATTTCTCTGCGAGCATGAACCCGGAAATTGTAGGCATCTACATTTCAC
CCTTAACGAGGCATCTGTGTATCTGCAATGGCATCCTCTTACTTTCTCAA
AAAGCTGTGTCAGAGAAGGCAGGATGAAATTTGAACCCATACTCATTCAG
GGCAAGGCAGACGTTCCCTGTGCTCTGGGAAGATAAAGGACCCGGACAGT
GGAGTTTATATCATCAGCCCTAAGTGCTTTATGATTCCCTGAACAGCAGC
TCATTTCTGTGACCCTCGGTAGCACAATAGACCTGCTGAGCCAGCTCAGC
TCTGTGCAGTGGTACACCCTTTACCACTCCGGGAGGGGGGGGGNAAAGCA
NGAAATACATGCTCCCCAAGGACCAAGGTTGAATAACAAACAAACCCTTT
CTACAATTCTAAGAACAACATAATACTTCCGGTGCTTTACTATTTTATAA
GGTGACAGTTTGGTCACCCTACTCCCTTACTTAACTTTCTGCTTCATATT
CCCTCATCTACCTATTTTCTCTCCTTTTCTTCCTTCACTCATTTTCTATC
CTTCTACGCCCTTCTTTTTTCCTTCTTTTTTTAATTTCAAATCATTTCCT
TTCTCTCCTCTTTTTTCTTTCTTTTTTCTTTTCCTCCCCATTTCTTCCTC
TCCTTTCTCCTCGCCTCTTTTCATCTACCTCTCTCTCCTCTTTTATCGAC
TAACTCTCCCTCCCCCTTCTCTTCTTCTCTTTCTATTCTATTCTTTATCT
CCACATGTTATATCTTATATATCTTTTN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATAATGGTCTTTGTCTGCTGTAAG
GAAACGTTACCTTGATGAGGGACGAGGACTACACTTCCCTCTGGGTATAA
GGACTAATATTTAGGCTGTCAGATATTATGCTGGCTTAGTACAGTGGTAG
TTGTGGATTCTCCTCCAAGATCCATGACTTCACTAGCTTTGTGTAGTTGG
CTAGGTTTCCAGCACCAGGCATGGGCTCCCTCTTACTGAGTGTGTTTTAA
CTGCATTTGGACAGTTGCTGGTTATTGTCAAGGTATTCATGTCACCACTG
TGTTCTTAACTTGCCATGACAAACTTTTCTATAGGACTCATAGGTTTTAA
AGAGCAGATAGGGGCTCAATCCTTCATATTGTTTGTAGTTTTGCAATGAG
ATCCAGCCATGTAAATTTCTTTGGTTAATTCTGGGCCTGATGTGTACAGA
GAAGCTTTGGACCCCAATTGATAATATGCTAACCACTCTTTTCTAAGGGC
CCTCTTGCCAGATAATTTTGCATATTTGATATTTATCCTTCCTTTCTCTT
TTTCTCGTTGCTTTTTCTGGTTGGTAAATGGCCTTTTGCCTGTCTCAATC
TTGCTCAACATTCCTTTGCTACTGCCCTTTTCTGTGTTAAATCTTTGTCC
TCTTCTTCTTCTTCTTTTTGTTCCCTCATCCTCCTTCTTCTTATTCTCCG
CTCAATCTTACTTCGCTCTCCTCTTTTTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_h08.b1 MSMg01no438_h08.b1 CHROMAT_FILE:
MSMg01no438_h08.b1 PHD_FILE: MSMg01no438_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:15 2005
         (353 letters)



>mm_chr13_36934258_36935010
          Length = 753

 Score =  588 bits (304), Expect = e-172
 Identities = 328/336 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatttctctgcgagcatgaacccggaaattgtaggcatctacatttcaccctt 64
           ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatttctctgcgagcatgaatccagaaattgtaggcatctacatttcaccctt 264

                                                                       
Query: 65  aacgaggcatctgtgtatctgcaatggcatcctcttactttctcaaaaagctgtgtcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacgaggcatctgtgtatctgcaatggcatcctcttactttctcaaaaagctgtgtcaga 324

                                                                       
Query: 125 gaaggcaggatgaaatttgaacccatactcattcagggcaaggcagacgttccctgtgct 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 325 gaaggcaggatgaaatttgaacccgtactcattcagggcaaggcagacgtttcctgtgct 384

                                                                       
Query: 185 ctgggaagataaaggacccggacagtggagtttatatcatcagccctaagtgctttatga 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 ctgggaagataaaggacccggacagtggagtttatatcataagccctaagtgctttatga 444

                                                                       
Query: 245 ttccctgaacagcagctcatttctgtgaccctcggtagcacaatagacctgctgagccag 304
           ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 445 ttccctgaacagcagctcatttctgtgaccctcagtagcacaatagaactgctgagccag 504

                                               
Query: 305 ctcagctctgtgcagtggtacaccctttaccactcc 340
           |||||||||||||| |||||||||||||||||||||
Sbjct: 505 ctcagctctgtgcaatggtacaccctttaccactcc 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)