BAC Information

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BAC

Clone NameMSMg01-438P24
Chromosome13 (Build37)
Map Location 25,898,036 - 25,898,454
singlet/doubletsinglet
Overlap genenone
Upstream geneBC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438P24.T7 (MSMg01no438_p24.b1)MSMg01-438P24.TJ (MSMg01no438_p24.g1)
ACCAG529461AG529462
length773785
length of high quality
(start - end)		415 (47 - 461)234 (76 - 309)
definitionCHROMAT_FILE: MSMg01no438_p24.b1 PHD_FILE: MSMg01no438_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:59 2005CHROMAT_FILE: MSMg01no438_p24.g1 PHD_FILE: MSMg01no438_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATGTTTATTCTCTATTTATTTGATGAGGACTTTTAAGCAGTAA
GAGGTCAAAAGTGAATACAGACAAAGGAGTTTATTTTTACGTGAGAATTT
GAAGCTGATGTTCAGACTCAGGCCTAGTTTTCCTACTGCAAAGACTCAAG
TCTGCAACAGTGTCTGTGCCTCCGCCCCCTCTTCATGTGGAAAGCAGAGT
GCTTAGTGTCCTCTAGCCCACTCGTGGCTGTGAAGACTGAAGAGAATGCT
GTCTATTGATGCTGCCAGAGAAGGCTTCTGAGCACATGGGGTGTGTCCAA
AATGAGTGTCTCCTTTTGTTGTAATCCTTTTGAGACAGCATCTCACAGAG
AGCAGGCTGGCCTTCAATTCTCTTTGAAGTGGAAACCAGCCTTGTACTCT
TGATCTTTCTGNCTTCACCCTCCCAGAACTTGGNATANAGACGTGCACCA
GGACACGCAGCGGATGTTACAGTCATACTGTTGAGACAATGTCTGTTAAA
TCCTGGATGGGAAGGGAAAGGGGCAAAGGTAACTTTTGTTCTCAAAAAAA
AAAAAATGTAAGGGTATTAATGGGACTTGCACAGGGTCTACTATAAGGGA
TTGAAGGTTCTTAACCAACAAATTTTGGTTTGGAAGGGGGGGGATTTTTT
TAATTCTTACTTTTTCTAACCTCTAATCTTTCTGTTGGTTTATCCCCTCC
GCCCCTTCTCCAACTTTCTAAGG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATAATGTGAGCCACAGATGCTATT
ATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTACAACC
CAGTTGTTATTCTCCAGTCGTCTGCTGTATATGTGTTGGAGGCCTCACAC
CAGTATATTCTGCCTGGTTGATGAGTCACAGATCCTTAAGCAATTTTACC
TTGCATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAG
ATATTTTCTTNNTTNNNNTTTTTTTTTTTTTTTTTNNNATTTNNCTATTT
TTTTTTTTTCCCCCTGTTCTCCCCCCCCCCCCTTCCCTCTCTCTTGTTCC
TTTCTCTCCTCCTTTTTTTTTCCCCCCCCCCCCCCTCCCACCATANCTCT
CCCCTCTCCCCCTTTCCCCCCTCTCTTANTTTTTCTCTCTCTCTCTTCTT
CTCCCCCTCTCTCCCCCCCTCTTCTTCTTCTTCTTTTTTTCTCTTCTTCT
CTTTTCCTTTCTACTCTCTCCACCCCTTCTTCCTCCTTTTTCTTCTTTCC
TTTTTTCTTCTTTTATCTCTCTTTCTTCCCCTCTATCTTCCTCCTCCCCA
TTTCCCTTCTCCCTTCTCTCCTTCTCTCTTTCCTTCCTCTCTTTTCTACC
CTCCTCCTTTCTCTTCTTTCCCCTCTCCTTTCTTTTTTTCTCTTTCTTAC
TCTTCTCCCCTTCTTATCTCTCCCCTCTTTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_p24.b1 MSMg01no438_p24.b1 CHROMAT_FILE:
MSMg01no438_p24.b1 PHD_FILE: MSMg01no438_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:59 2005
         (415 letters)



>mm_chr13_25897840_25898654
          Length = 815

 Score =  714 bits (369), Expect = 0.0
 Identities = 403/419 (96%), Gaps = 8/419 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgtttattctctatttatttgatgaggacttttaagcagtaagaggtcaaaa 64
           |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattctatgtttactctctagttatttgatgaggacttttaagcagtaagaggtcaaaa 256

                                                                       
Query: 65  gtgaatacagacaaaggagtttatttttacgtgagaatttgaag--------ctgatgtt 116
           ||||||||||||||||||||||||||||||||||||||||||||        ||||||||
Sbjct: 257 gtgaatacagacaaaggagtttatttttacgtgagaatttgaagctggaggcctgatgtt 316

                                                                       
Query: 117 cagactcaggcctagttttcctactgcaaagactcaagtctgcaacagtgtctgtgcctc 176
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cagattcaggcctagttttcctactgcaaagactcaagtctgcaacagtgtctgtgcctc 376

                                                                       
Query: 177 cgccccctcttcatgtggaaagcagagtgcttagtgtcctctagcccactcgtggctgtg 236
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cgccccttcttcacgtggaaagcagagtgcttagtgtcctctagcccactcgtggctgtg 436

                                                                       
Query: 237 aagactgaagagaatgctgtctattgatgctgccagagaaggcttctgagcacatggggt 296
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 437 aagactgaggagaatgctgtctattgatgctgccagagaaggcttctgagcacattgggt 496

                                                                       
Query: 297 gtgtccaaaatgagtgtctccttttgttgtaatccttttgagacagcatctcacagagag 356
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 497 gtgtccaaaatgagtgtctccttttgttgtaatccttttgagacagcatctcacggagag 556

                                                                      
Query: 357 caggctggccttcaattctctttgaagtggaaaccagccttgtactcttgatctttctg 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caggctggccttcaattctctttgaagtggaaaccagccttgtactcttgatctttctg 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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