BAC Information

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BAC

Clone NameMSMg01-440D10
Chromosome13 (Build37)
Map Location 64,886,461 - 64,886,954
singlet/doubletsinglet
Overlap geneCntnap3
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440D10.T7 (MSMg01no440_d10.b1)MSMg01-440D10.TJ (MSMg01no440_d10.g1)
ACCAG530383AG530384
length751837
length of high quality
(start - end)		496 (53 - 548)84 (85 - 168)
definitionCHROMAT_FILE: MSMg01no440_d10.b1 PHD_FILE: MSMg01no440_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:34 2005CHROMAT_FILE: MSMg01no440_d10.g1 PHD_FILE: MSMg01no440_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAT
CCGCGGAATTCCTCTGGTTCCACTTTGGGTTTTATATATAACTAATTTTA
AGGTGAGACTCTAAGCACATACATAATCAGCATTTACTGCAGGGGATGCC
TTAGAGGAGATAATGTTTTCTTCGTGTGTTGTCATAATAAATGGATTCAT
TTCATTACAGAAAATGGTGAATTTGTTTTCCTCAGTAATATATCTACACA
TAAATCATGCTCTTCTCTGACTTATTCAGTGATCTGAATAAATGGTTGCA
CTTTTCAAAATTTACATGTCTGTAACTAGTTATTTTTCTAGGTGCCGTAC
TGAATGATGGGCTATGGCACTCAGTTTCCGTGTCTGCTAAGGGTAGCTAC
CTAAGCCTTCTGGTAGATGGAGACACTGCTCAGACCCTGATGTCTGTGGA
GATTCATTTGGGCGACACTTACTATTTTGGAGGTAAGTGAAGGCAATTCA
ACCACATTGACAGACAGTGGGTCCAAATAATCTCCACTGCCTCTCATCAC
AGGCATGTTAACATATTTATTTATTTATTTATTTATTTATTTATTTATTT
ATCTATTATTTCAATACGCAATCCCCTCCCTCCCTCTCTTTCATTCCCTC
CTTCATCTCTCCTCTTATCCTGTTATTTTCTCTTCCCGGCTCTTCTATTT
TTTATTCATTCTGCTTTCATTAATCCGGAGCCATCCTTTTTATTCTTTAT
G

CGAANCCCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGAGGGGAGTGTGTC
CTAAGAAGGTTTAGAAGTACACACTTTAAAAATTAAGCTGTCGTGTGTGT
GTGTGTGTGTGTGTGGGTGTGGCCTGCCCCCCCCCNCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCNCTTTTTCTCCCCCCTCCTCCCCCCCCCCCCCCCCCCCCC
CCTCCCCTCTCCTNCCCCCCCCCCCCCTTTTTTTTTTTTCCCCCCGCCCC
CCCCCCCCCCCCCCCCCTCCTTCTTCCTCCCCCCCCCCCGCCCCCCCCCT
CCCTCCCCCCCCCCCTCTTCCGCCCCCCCCCCCCCCCCTGTTTTTTTTCC
CCTCTCCTCCCCCTTCCCCCTTCCCCCCCTCTCCCCCCTCCTCCCCCTTT
CTCCTCTCCCTCCCTCCCCCCCCTCCCCCCCCCCTCCCTCTCCCTCCCTC
TCCCCCCCTCTCCTCCCCTTCCCCCCTCCCTCCCCCCCTCCCCTCCCCCC
TCTCTCCCTCTCTCCCCCCTCCCCCCCCACCCTCCTCTCCCTTCCCCCCC
CCCCCCCTCCCCTCCCCCCCCCTCTCCCTCTCTCCCCCTCCTCCCCCCCC
CCCCTCCTTCTCCCCCCCCCTCCCCTTTCCTCCCCCCTCTCCCCCCCCTT
CCTCCCCCCCCTTCCCTCCCCTCCTCCCCTCCCCCCCTCCCCCCCCCCCC
CTCACCCGCTTCCTCCTCCCCCATCCCCCCCTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_d10.b1 MSMg01no440_d10.b1 CHROMAT_FILE:
MSMg01no440_d10.b1 PHD_FILE: MSMg01no440_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:34 2005
         (496 letters)



>mm_chr13_64886258_64887154
          Length = 897

 Score =  926 bits (479), Expect = 0.0
 Identities = 490/497 (98%), Gaps = 7/497 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcctctggt----tccactttgggttttatatataactaattttaaggtgagactc 59
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gaattcctctggtaagg---actttgggttttatatataactaattttaaggtgagactc 641

                                                                       
Query: 60  taagcacatacataatcagcatttactgcaggggatgccttagaggagataatgttttct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 taagcacatacataatcagcatttactgcaggggatgccttagaggagataatgttttct 581

                                                                       
Query: 120 tcgtgtgttgtcataataaatggattcatttcattacagaaaatggtgaatttgttttcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tcgtgtgttgtcataataaatggattcatttcattacagaaaatggtgaatttgttttcc 521

                                                                       
Query: 180 tcagtaatatatctacacataaatcatgctcttctctgacttattcagtgatctgaataa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tcagtaatatatctacacataaatcatgctcttctctgacttattcagtgatctgaataa 461

                                                                       
Query: 240 atggttgcacttttcaaaatttacatgtctgtaactagttatttttctaggtgccgtact 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 atggttgcacttttcaaaatttacatgtctgtaactagttatttttctaggtgccgtact 401

                                                                       
Query: 300 gaatgatgggctatggcactcagtttccgtgtctgctaagggtagctacctaagccttct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaatgatgggctatggcactcagtttccgtgtctgctaagggtagctacctaagccttct 341

                                                                       
Query: 360 ggtagatggagacactgctcagaccctgatgtctgtggagattcatttgggcgacactta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ggtagatggagacactgctcagaccctgatgtctgtggagattcatttgggcgacactta 281

                                                                       
Query: 420 ctattttggaggtaagtgaaggcaattcaaccacattgacagacagtgggtccaaataat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctattttggaggtaagtgaaggcaattcaaccacattgacagacagtgggtccaaataat 221

                            
Query: 480 ctccactgcctctcatc 496
           |||||||||||||||||
Sbjct: 220 ctccactgcctctcatc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 897
Length adjustment: 10
Effective length of query: 486
Effective length of database: 887
Effective search space:   431082
Effective search space used:   431082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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