Query= MSMg01no440_o12.b1 MSMg01no440_o12.b1 CHROMAT_FILE:
MSMg01no440_o12.b1 PHD_FILE: MSMg01no440_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:30 2005
(245 letters)
>mm_chr13_5969269_5969913
Length = 645
Score = 466 bits (241), Expect = e-136
Identities = 244/245 (99%)
Strand = Plus / Minus
Query: 1 atttatcagttgcattaaaataatttcaaaatattttagttatgaatatataatgagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atttatcagttgcattaaaataatttcaaaatattttagttatgaatatataatgagttt 455
Query: 61 attatttaagtgggtggtaagacatctagagttatttccataacaagtaagaattatggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 attatttaagtgggtggtaagacatctagagttatttccataacaagtaagaattatggc 395
Query: 121 agcaaaataattttttgttgttctagctcctagtattggctacttaattggcaagtatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 394 agcaaaataattttttgttgttctagctcctagtattggctacttaattggcaagtaact 335
Query: 181 aggatttttaacagatccacaaacatcaaacactatttttaaaacaaatgaagctgtata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aggatttttaacagatccacaaacatcaaacactatttttaaaacaaatgaagctgtata 275
Query: 241 gatta 245
|||||
Sbjct: 274 gatta 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no440_o12.g1 MSMg01no440_o12.g1 CHROMAT_FILE:
MSMg01no440_o12.g1 PHD_FILE: MSMg01no440_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:30 2005
(539 letters)
>mm_chr13_5842985_5843924
Length = 940
Score = 998 bits (516), Expect = 0.0
Identities = 534/540 (98%), Gaps = 1/540 (0%)
Strand = Plus / Plus
Query: 1 cttatcagttaacaattgatgtatggtaaaggtcaattctctgaatgcaaaaccctgacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttatcagttaacaattgatgtatggtaaaggtcaattctctgaatgcaaaaccctgacc 260
Query: 61 accaaggagggagcctgaagggctaggacgaagtggagataagtacaggattgaaccggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaaggagggagcctgaagggctaggacgaagtggagataagtacaggattgaaccggt 320
Query: 121 tctgttgcaggcaaagcaggaaatgagtagcctggttgaagctctgcctgtaaactcttg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgttggaggcaaagcaggaaatgagtagcctggttgaagctctgcctgtaaactcttg 380
Query: 181 gtaaatggaagtaatccatggtagtcttagcatttcttccattcttcataggactccttc 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 381 gtaaatggaagtaatccatggtagtcttagcatttcttccattcttcatgggactgcttc 440
Query: 241 tgtctgctgatgagggaccacaccatttaaatggactgaaatcaaactatttctctatcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtctgctgatgagggaccacaccatttaaatggactgaaatcaaactatttctctatcc 500
Query: 301 ccaaatagtagctttgagactgggaataatctgtgtctgcggccatggacagaaggtggg 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 501 ccaaatagtagctttgagactgggaataatctgtgtctgtggccatggacagaagatggg 560
Query: 361 ccacctttttagaaagagttttttt-ccccaatatgagcatcaccctcccctaggagaat 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacctttttagaaagagttttttttccccaatatgagcatcaccctcccctaggagaat 620
Query: 420 gtgggactaatccaagggtgttggaagttacatagcaactaattcttcaacggtgtttat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgggactaatccaagggtgttggaagttacatagcaactaattcttcaacggtgtttat 680
Query: 480 gaaacggaagcctagcaactcatggaggagtcagatccacaggatctcagtccatgaggc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaacggaagcctagcaactcatggaggagtcagatccacaggatctcagtccatgaggc 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 940
Length adjustment: 10
Effective length of query: 529
Effective length of database: 930
Effective search space: 491970
Effective search space used: 491970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
