Query= MSMg01no441_j23.b1 MSMg01no441_j23.b1 CHROMAT_FILE:
MSMg01no441_j23.b1 PHD_FILE: MSMg01no441_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:28 2005
(605 letters)
>mm_chr13_23778104_23779108
Length = 1005
Score = 1118 bits (578), Expect = 0.0
Identities = 599/606 (98%), Gaps = 2/606 (0%)
Strand = Plus / Minus
Query: 1 tgagtccttaccacttgttatttaagttttaattccatttttaaaattactttgtgattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgagtccttaccacttgttatttaagttttaattccatttttaaaattactttgtgattt 746
Query: 61 gacttagttcaatgtatgttatttatattaaaaagtgattttattcaagtaaataaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gacttagttcaatgtatgttatttatattaaaaagtgattttattcaagtaaataaattt 686
Query: 121 agtggaaaaagtttgtaaacttaatgtagtttttttatacaacaaatcgtagcttctgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtggaaaaagtttgtaaacttaatgtagtttttttatacaacaaatcgtagcttctgta 626
Query: 181 aactacattattatgctaacacttttatattataataaaagatccatcttaacacaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aactacattattatgctaacacttttatattataataaaagatccatcttaacacaatta 566
Query: 241 agccaaaagtctttttattaagtaaacaaaaaaatgtgcaaatgcaattatgactagaac 300
||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 565 agccaaaagtcaaattattaagtaaac-aaaaaatgtacaaatgcaattatgactagaac 507
Query: 301 taggtaaacttgaatccaaccttaaaagaggccacaccttaatgtaatgcctaagaatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 taggtaaacttgaatccaaccttaaaagaggccacaccttaatgtaatgcctaagaatgt 447
Query: 361 gaaataatttatagtaattgatggttttcaattaattaaagttgataca-ttttttagac 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 446 gaaataatttatagtaattgatggttttcaattaattaaagttgatacatttttttagac 387
Query: 420 cctttataaaaaccaatttacacttaaatcacataacttattcatttcctgctgggatag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cctttataaaaaccaatttacacttaaatcacataacttattcatttcctgctgggatag 327
Query: 480 acaatgtgctcaaatttatattcataaaataggaaatattcacagcaattatgcaagtga 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acaatgtcctcaaatttatattcataaaataggaaatattcacagcaattatgcaagtga 267
Query: 540 gaggagctaactgggacaacagaaaagactgaaggtcaatgaacaaagacataggtatct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaggagctaactgggacaacagaaaagactgaaggtcaatgaacaaagacataggtatct 207
Query: 600 attgaa 605
||||||
Sbjct: 206 attgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_j23.g1 MSMg01no441_j23.g1 CHROMAT_FILE:
MSMg01no441_j23.g1 PHD_FILE: MSMg01no441_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:28 2005
(512 letters)
>mm_chr13_23585366_23586277
Length = 912
Score = 913 bits (472), Expect = 0.0
Identities = 493/500 (98%), Gaps = 1/500 (0%)
Strand = Plus / Plus
Query: 1 tgtgggcctctacttttttatctttgatgataagaatgagaacagctctcaacaggaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgggcctctacttttttatctttgatgataagaatgagaacagctctcaacaggaaat 260
Query: 61 ttcattggtttacaaaaagaagtacatgcatagccaagctttttgcttgctgctttgcaa 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ttcattggtttacaaaaagaagtacattcatagccaagctttttgcttgctgctttgcaa 320
Query: 121 atgcctttaattcaaactgccagacctcggcagacagcagagaccccaggcagcagttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcctttaattcaaactgccagacctcggcagacagcagagaccccaggcagcagttca 380
Query: 181 agctggaagaagccagagtctcctgccctgctgatctgaaatcaaagttctggagatgat 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 agctggaagaagccagagtctcctgccctgctgatctgaaatcagagttctggagatgat 440
Query: 241 accaggacacatcatgtagatgtgtctctaagacatctttctctagcctgggatctggag 300
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accaggacacagcaggtagatgtgtctctaagacatctttctctagcctgggatctggag 500
Query: 301 ccttatttttgtaaggagttagatattaaatattttctactgttgtatggtgtggtcgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttatttttgtaaggagttagatattaaatattttctactgttgtatggtgtggtcgca 560
Query: 361 gatgaagctggatttggctgtggcaacaaaatttaatgt-acaggctggggagacagttc 419
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 561 gatgaagctggatttggctgtggcaacaaaatttaattttacaggctggggagacagttc 620
Query: 420 agttggtaaagtgcttgccatgcaagcattaggacccgatcgtttgatccttagaaccca 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 agttggtaaagtgcttgccatgcaagcattaggacctgatcgtttgatccttagaaccca 680
Query: 480 catcaaaaagccaagctctg 499
||||||||||||||||||||
Sbjct: 681 catcaaaaagccaagctctg 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
