BAC Information

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BAC

Clone NameMSMg01-442I18
Chromosome13 (Build37)
Map Location 18,686,206 - 18,686,536
singlet/doubletsinglet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442I18.T7 (MSMg01no442_i18.b1)MSMg01-442I18.TJ (MSMg01no442_i18.g1)
ACCAG532168AG532169
length809779
length of high quality
(start - end)
266 (48 - 313)333 (81 - 413)
definitionCHROMAT_FILE: MSMg01no442_i18.b1 PHD_FILE: MSMg01no442_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:45 2005CHROMAT_FILE: MSMg01no442_i18.g1 PHD_FILE: MSMg01no442_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTCGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTATTTTCCCATTTGTCAATTTTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAACTTTTCCTTTTTTCTTTTATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATATGTTTCTTTGCCTCTGGTTTTATGTGCCGATCCCT
GTTTCACTTATAACCCACCCCTTTTCCCCCTTTTTCTTTTTCTTTTCCCC
CCCCTTTTCTCTCTCTTTGAGCCATTTCTCCCCCTTTTTCCCCCCCTGCT
TGTACATTTTCGTTTATTCTTCCTCTTTGTATTTTACTACTCCTATTTTG
TTTCCTCTCCGTTTTTTTTTCTCTTCGTATTTTTCTTTCATCTTTTATTC
TTTCTGTCCTTTTTTCCACCGCATCCCCCTTTTTTTTTTTTTTTTTTTTC
TGTTACACTTTCCTCCTGCTTTTTTTTTCCCCTCTTTTTTTCTCTCTTTT
CTCCCCTTCTTTCTCTTTTTTTTTTTTTTCTCCTACTCCCTCTTTTTTTA
TTTTTTTTCACCCCCACCTCTTTTTTTTTTTTATCCTCCTATTATTCATT
TCTCCCCTT
NCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTACTTTCCAAATGTTT
TATCTAGTTTATGGAGAGACATTTAGCGTCTGAAGGAAATATTGGAAAAA
AACATTAACTTGTGGGAGATGTCCAGGTCCTCTCATGATGTCATTCCTGA
CTGGGAACCAGGCACCATATTCTAAGTAAATTATCCAGCATCCACTTCAA
CAGGGAACAAGACAACAGAGAGAAGTCGGGGTTTGCTTCCTTGGTTTGCT
TGTTTAGAAATTCCAGTCAGAGCCTGTTCTTTTGTCTGCTCAGTATTAGG
GCTTTTTGTGCAAAGTGTTTAAGGATAGATATGTGTGAAGAGCATTGTTA
CAGGAAACACAGGACCTGAAAGCTAGGAGGGGTTACTTCAACATTCTAGG
AGAGAGGGACAAACTCCGAAATGTATTGTCCTCGCTCACCTGATTACAGT
TTTGCTCCCCACCCCATTCTCATGAACGCTATAATAATTTTCCCTCTTTG
TTCTTTTCCTAAAATCTTTTTCCTCCTCTCGTTCTTCTATTCGTCTCTCC
TTTCTTCTTTCCTTATTTTTTCCCCGCTCTTTTCTTTTTTTTATCTTTTC
CCTTTCACTTTTTCTTTTCCCCCCTTTTCTTTTTCTTCTCACCCCTCCTT
CTTTTTTCCCTCCCCTACCCTTCTTTTTTTCCCCCCTTTCCTCCCCACTT
CTATTCATTTTTTCTTTATTCTTCCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_i18.g1 MSMg01no442_i18.g1 CHROMAT_FILE:
MSMg01no442_i18.g1 PHD_FILE: MSMg01no442_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:45 2005
         (333 letters)



>mm_chr13_18686006_18686736
          Length = 731

 Score =  516 bits (267), Expect = e-151
 Identities = 317/335 (94%), Gaps = 6/335 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtactttccaaatgttttatctagtttatggagagacatttagcgtctgaaggaaat 60
           |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 caggaactttccaaatgttttatctagtttatggagagacatttagcgtctggaggaaat 260

                                                                       
Query: 61  attggaaaaaaacattaacttgtgggagatgtccaggtcctctcatgatgtcattcctga 120
           |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 261 attggaaaaaaa-attaacttgggggagatgtccaggtcctctcacgatgtcattcctga 319

                                                                       
Query: 121 ctgggaaccaggcaccatattctaagtaaattatccagcatccacttcaacagggaacaa 180
           |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 320 ctgggaaccaggcaccatattctaagtaaattatgcagcatccgcttcaacagggaacaa 379

                                                                       
Query: 181 gacaacagagagaagtcggggtttgcttccttggtttgcttgtttagaaattccagtcag 240
           ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 380 gacaacagagagaagtcggggtttgcttccttgatttgcttgcttagaaataccagtcag 439

                                                                       
Query: 241 agcctgttc--ttttgtctgctcagtattagggctttttgtgcaaagtgtttaaggatag 298
           ||||   ||  |||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 440 agccc--tcacttttgtctgctcagtattggggctttttgtgcaaagtgtttaagcatag 497

                                              
Query: 299 atatgtgtgaagagcattgttacaggaaacacagg 333
           ||||||||||||||||||||||||| |||||||||
Sbjct: 498 atatgtgtgaagagcattgttacag-aaacacagg 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 731
Length adjustment: 9
Effective length of query: 324
Effective length of database: 722
Effective search space:   233928
Effective search space used:   233928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)