Query= MSMg01no442_k11.b1 MSMg01no442_k11.b1 CHROMAT_FILE:
MSMg01no442_k11.b1 PHD_FILE: MSMg01no442_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:55 2005
(491 letters)
>mm_chr13_53570497_53571387
Length = 891
Score = 876 bits (453), Expect = 0.0
Identities = 479/493 (97%), Gaps = 12/493 (2%)
Strand = Plus / Minus
Query: 5 ggaattcgaggggtgtc-cacctcctatttgcatgactatttagggcagcttcctagccc 63
||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ggaattcga-gggtggctcacctcctatttgcatgactatttagggcagcttcctagccc 633
Query: 64 gagacttttccctggttaggcagagatacagtctccgcctgcagtgatgtgcttgaaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gagacttttccctggttaggcagagatacagtctccgcctgcagtgatgtgcttgaaaag 573
Query: 124 caaatgaggtcctgctcaagttcgggagcttgggcaaggtgtaaaggtgactcttcgctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 caaatgaggtcctgctcaagttcgggagcttgggcaaggtgtaaaggtgactcttcgctg 513
Query: 184 ttgcggagttccgcttggaaccccactttggccgcttgcaagtgttcacggcgcataaac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttgcggagttccgcttggaaccccactttggccgcttgcaagtgttcacggcgcataaac 453
Query: 244 attattctaccaccccggagtttaagttta-----ttttttgtgtcctaagtgccaaagc 298
|||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 452 attattctaccaccccggagtttaagtttacagag-----tgcgtcctaagtgccaaagc 398
Query: 299 cagccctcctctctgggaagacacccaaacctgcacctttttcaggctgggaaaaatctc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cagccctcctctctgggaagacacccaaacctgcacctttttcaggctgggaaaaatctc 338
Query: 359 tgttcagggatttttacaaaggtcctgctttggggttggtgaaggcgggtgatgagtccc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgttcagggatttttacaaaggtcctgctttggggttggtgaaggcgggtgatgagtccc 278
Query: 419 tagacaaagaaagcgttgggtaaattaatgttgcttttgatatacaagaatatttttaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tagacaaagaaagcgttgggtaaattaatgttgcttttgatatacaagaatatttttaaa 218
Query: 479 ctaattccccaca 491
|||||||||||||
Sbjct: 217 ctaattccccaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no442_k11.g1 MSMg01no442_k11.g1 CHROMAT_FILE:
MSMg01no442_k11.g1 PHD_FILE: MSMg01no442_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:55 2005
(244 letters)
>mm_chr13_53394169_53394812
Length = 644
Score = 472 bits (244), Expect = e-138
Identities = 244/244 (100%)
Strand = Plus / Plus
Query: 1 tctcagagtataaataacagacgagagcagtggtgatgacgaggaaatttccagcaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcagagtataaataacagacgagagcagtggtgatgacgaggaaatttccagcaatta 260
Query: 61 agatgtgaatcttcagactgggaaggcctgccagtgctccaggaggggaaatgaaaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgtgaatcttcagactgggaaggcctgccagtgctccaggaggggaaatgaaaataa 320
Query: 121 gctcacatctggagcatcatgaaagctcaagggaggaatcagatgggtaaggggaatcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcacatctggagcatcatgaaagctcaagggaggaatcagatgggtaaggggaatcca 380
Query: 181 accatcaccaggcagagaggacaagcatgtcttagtcagggttactattgctgtgatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accatcaccaggcagagaggacaagcatgtcttagtcagggttactattgctgtgatgag 440
Query: 241 acac 244
||||
Sbjct: 441 acac 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
