BAC Information

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BAC

Clone NameMSMg01-443H11
Chromosome13 (Build37)
Map Location 96,048,065 - 96,182,510
singlet/doubletdoublet
Overlap geneZbed3, Aggf1
Upstream geneScamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41, Pde8b
Downstream geneCrhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443H11.T7 (MSMg01no443_h11.b1)MSMg01-443H11.TJ (MSMg01no443_h11.g1)
ACCAG532866AG532867
length768779
length of high quality
(start - end)
353 (75 - 427)108 (78 - 185)
definitionCHROMAT_FILE: MSMg01no443_h11.b1 PHD_FILE: MSMg01no443_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:04 2005CHROMAT_FILE: MSMg01no443_h11.g1 PHD_FILE: MSMg01no443_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,182,158 - 96,182,510)(96,048,065 - 96,048,172)
sequence
ACCCTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTACTGTACCAAGAATGTTTTATTGGTTGTTTGCACATCA
TAGAGGCAGGTTAAACTCTCACGAAAATGGATGAGCTGTCAACGAGCCAC
TTTCTTATCAGCTTGCAGAAGGAGTCAGGCTGCTAGATAAGCAGAGTGGG
CAGGTTTATTGCTGTGCTTGGGAAGGGCAAGGAATTCTGAGGGGGTCTCA
TGCTTGCAAAGCTTACCACTCCTTTGTTAATGCTCTCTGTGTGCCTATGT
CTATCTAACTATCTGTCTATCCATTTATCTATGTCTTCTGTCCCTCCCCA
TTTTTCTCCCTCTCCCTCACCCTCCCTCCCTCTCCCTCTCCTTCCCTCTC
CCTCCCTCTCCCTCCTTCTCCCTCCCTCTCCCTTCCTGTTCCCTCCACTT
CCTTTTTTTCCCCTTCTTTTTCTCCCCCCTCTTTCTTTTTTCTCCCCCCC
CTTTTCCCCCTATTCTTCTCTCCCCTTTTTCCCCTCCCTTCTCTTTATTT
TTTTCCCTCCCTTTTATCTTTCTACTCCTTTTTTTTTTTTTTTTCCCCTT
ATCTCCCTATCTTTTTCTTCCCCCCCTCTCCTCTTCCTCCCCTTCCATTT
TTCCCCCCCTTTTCCCCCACTCTTTCACCCTTTTTCCTCCTCTCTCTTCT
TCTTCACCCTATCCCTTTTTTCCTATTTTCATATTCCCACTTCCTTTTAC
CCCCTATCTAATCTTCCN
TTTTTCGATGCAGCGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATTGTGAAAAGTGATTGGGT
AGTTCACACAGGGGCTATACATCTGATCACAGTAGTACAGCCACTTCTGA
TGAGGGTTAGTATGGATTGGGTAGTTATTCAGTGTTTAAGTCCCTCTGCC
CTGCAATGCCTTGGCTCACTCAACCTTTACCAAACGCCTTCCATGTGGTA
TGTTTTTTTCTACGCCTTGACAATATTTCACTGTTTGTTCAAGGACTTAA
CCCTTGCCCTCCGACAACGTTTCTCTTTGCAGAAGACCGAAAGCCCCCTC
GCCGTTTCTCATTTTTTATCCCCCCCTTTGCAATTTTCTTATCTCCCGCC
CCATTTTTTCTTTCCCATTCCCCACCCTCCCCCTTCCCACCTTTTCCCGT
TTTTACACTTCCCCTATCCCTCCTTTCCGTTCCTCCTTTTTTTTCCCCCC
CCCACTTCTTTTTTCTTTTCCTTTCCTTTTTTTTCCCCCTCCTTTCTGTT
TTCTCGTTTTTTCTCCCTTTCCCTTTTTTTTTTTTCTCTCCCCTTTTTCC
CTCTTACCTTCCTTTCCCCCTCCCCTCTTATTTTTTCCTTCCTTCCCTTT
TTACCCCTTTTACTTTTCCCCCTCTCCCTTTTACCCCTCCTGTTCTCACT
CCCCCCCCTTTTTCCCCTCCCCTCTTTGCTTTACTCTATTTTTCTCTCCA
CTTAACCTCTCTCCCTTTCTCTCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_h11.b1 MSMg01no443_h11.b1 CHROMAT_FILE:
MSMg01no443_h11.b1 PHD_FILE: MSMg01no443_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:04 2005
         (353 letters)



>mm_chr13_96182086_96182838
          Length = 753

 Score =  667 bits (345), Expect = 0.0
 Identities = 351/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttttattggttgtttgcacatcatagaggcaggttaaactctcacgaaaatggatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atgttttattggttgtttgcacatcatagaggcaggttaaactctcacgaaaatggatga 366

                                                                       
Query: 61  gctgtcaacgagccactttcttatcagcttgcagaaggagtcaggctgctagataagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gctgtcaacgagccactttcttatcagcttgcagaaggagtcaggctgctagataagcag 306

                                                                       
Query: 121 agtgggcaggtttattgctgtgcttgggaagggcaaggaattctgagggggtctcatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agtgggcaggtttattgctgtgcttgggaagggcaaggaattctgagggggtctcatgct 246

                                                                       
Query: 181 tgcaaagcttaccactcctttgttaatgctctctgtgtgcctatgtctatctaactatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgcaaagcttaccactcctttgttaatgctctctgtgtgcctatgtctatctaactatct 186

                                                                       
Query: 241 gtctatccatttatctatgtcttctgtccctccccatttttctccctctccctcaccctc 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtctatccatccatctatgtcttctgtccctccccatttttctccctctccctcaccctc 126

                                                                
Query: 301 cctccctctccctctccttccctctccctccctctccctccttctccctccct 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cctccctctccctctccttccctctccctccctctccctccttctccctccct 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no443_h11.g1 MSMg01no443_h11.g1 CHROMAT_FILE:
MSMg01no443_h11.g1 PHD_FILE: MSMg01no443_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:04 2005
         (108 letters)



>mm_chr13_96047865_96048372
          Length = 508

 Score =  209 bits (108), Expect = 4e-59
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtattgtgaaaagtgattgggtagttcacacaggggctatacatctgatcacagtagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtattgtgaaaagtgattgggtagttcacacaggggctatacatctgatcacagtagta 260

                                                           
Query: 61  cagccacttctgatgagggttagtatggattgggtagttattcagtgt 108
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccacttctgatgagggttagtatggattgggtagttattcagtgt 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 508
Length adjustment: 8
Effective length of query: 100
Effective length of database: 500
Effective search space:    50000
Effective search space used:    50000
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)