Query= MSMg01no443_h12.b1 MSMg01no443_h12.b1 CHROMAT_FILE:
MSMg01no443_h12.b1 PHD_FILE: MSMg01no443_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:05 2005
(242 letters)
>mm_chr13_104820092_104820733
Length = 642
Score = 416 bits (215), Expect = e-121
Identities = 235/247 (95%), Gaps = 10/247 (4%)
Strand = Plus / Plus
Query: 1 gccgactgtgtggcaccccaaggcaatcccagcaattggaaggtttagcctaaaggagca 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 gccgactgtgtggcaccccaaggcaatcccagcaattggaaggtttaggctaaaggagca 260
Query: 61 cacattcaaagctaggatagtagggtgcacagtcagactctgcagaaggaaatataatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacattcaaagctaggatagtagggtgcacagtcagactctgcagaaggaaatataatca 320
Query: 121 cctcccctcttactgtctcttctatcacccacggctgttaaggggccagagttaactttt 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccactcttactgtctcttctatcacccacggctgttaaggggccagagttaac---- 376
Query: 181 ta-----gtggttgtacagagacacagaggagtcagagaggagaactggatctctgtgag 235
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 -acaacagtggttgtacagagacacagaggagtcagagaggagaactggatctctgtgag 435
Query: 236 gaacact 242
|||||||
Sbjct: 436 gaacact 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no443_h12.g1 MSMg01no443_h12.g1 CHROMAT_FILE:
MSMg01no443_h12.g1 PHD_FILE: MSMg01no443_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:05 2005
(245 letters)
>mm_chr13_104956018_104956661
Length = 644
Score = 397 bits (205), Expect = e-115
Identities = 234/249 (93%), Gaps = 10/249 (4%)
Strand = Plus / Minus
Query: 1 accgaaacattttcctcctcaaggtttctggtagcttagatgataaaatacttactaggc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 398 accgaaacattttcctcctcaaggtttctggtagcttagatgagaaaatac-tactaggc 340
Query: 61 taaataatagttatagtgtttgtgtgactaacattgcagtacttgagaggcttaggaaac 120
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 339 taaataatagttaaagtgtttgtgtgactaacattacagtacttgagaggcttaggaaac 280
Query: 121 ttgccaaaagtcattctcgagttgcaggaaggtatggtagaggagaggaagacaagagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttgccaaaagtcattctcgagttgcaggaaggtatggtagaggagaggaagacaagagag 220
Query: 181 tcttagaagatgagc---------aggaagagtataggatagaggaaaacaaagactcgt 231
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 219 tcttagaagatgagcaggactcagaggaagagtataggatagaggaaaacaaagactcaa 160
Query: 232 gtgccaggt 240
|||||||||
Sbjct: 159 gtgccaggt 151
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space: 149860
Effective search space used: 149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
