BAC Information

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BAC

Clone NameMSMg01-443H24
Chromosome13 (Build37)
Map Location 37,563,077 - 37,563,405
singlet/doubletsinglet
Overlap genenone
Upstream geneFars2, LOC666758, Nrn1, F13a1, Ly86, LOC100042794, LOC100042800
Downstream geneLOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443H24.T7 (MSMg01no443_h24.b1)MSMg01-443H24.TJ (MSMg01no443_h24.g1)
ACCAG532891AG532892
length781774
length of high quality
(start - end)
125 (132 - 256)332 (80 - 411)
definitionCHROMAT_FILE: MSMg01no443_h24.b1 PHD_FILE: MSMg01no443_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:07 2005CHROMAT_FILE: MSMg01no443_h24.g1 PHD_FILE: MSMg01no443_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCATGGTCTAGTGTCATTNNNNNNNNNNNNTACTCAGAACATCGCG
CGGAATCCTTATACTTCCACATAAATTAATCTTTAACCACTTCATGGTCG
CAGNAATTTTTATTTTCTCTTATGCCCACTGTCTCGGAGGCTTGCTGCCT
CAGTCTGCTAACCTACGTCTAATCTTGAAAGCATCTAGCCTCCCTACAAC
CTAATCCACCTCTGAGACTTACCGCTGAAAAAGCTCACCCCTTCCTAGCT
CTTTCTGAACTCTGGCTGGCTGATCAACTCTGCTGTTCTGCTCAAAACTC
CTCTCTAAGCTGACTGATTCTTTCTTTTTTCTTTCGGCTTTTGACTGAAT
TGTTCTGTTTGTTTTCATACTAACTACCTAACTAACTTTTGCCTATCAGT
TCCAACCTGATTCCTAATCCTCCGGCTCCATCTGCCCTCAATTGTGGCTA
GTTTGTGCTCCCTTTGCCACTTGGTATCTGACACTTATTCTTAGTAAAAC
CGCCCCCCTCTCCCTTGTTCCTCTCCTTTTAAATAGCCTCCTTTTTTCTC
TTCCCCCCCAATTACCCCTTTTTCCGGCCCCCCTCTTGCCCAAATCCTCC
CCTGCAAAATATTCTCCTCTCTCCTCTTTTTTTTACTGTTTCTTACACAA
TTCCGCCCCGCCTTTTTTCTCCCCTTCCCCCCTTCCTTCTCTCCTGTTTT
GTTTATTACCCCAGCGCATTTCCACTCCTCCCTCTCCCTTATACCCTTTA
ATACATATTTCCATATTTTCTCACTCCCCCG
NTTTTTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCC
TTGAACTCAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG
GTGTGTGCCACCACTGCCCAGCTCTACAGAAGTTTCTAATTCCACAACAA
CTTGGGGGGGGGGGATACTCTTTAAGGGGACACAGGAGAAAAACAACACC
ATTGATTCTTGTCAACTTAAGATATCGCTTCCTCTTATTGCAAGGTATTT
TCCATTGACAGAGAAGAATAACATTTATTATGACATTTAGAAGACTATTG
GGGGGGGGTCCTCTCCTAAATGGGCAAGAAACACATTCTTATAACAAGAT
GCTCCCTTCCGACACCCCATGCTCAGCTCAGGAGACTTGTATGCCAACAC
CCATCTGGGTGTGTCCTGAATCTTGGCGCCCTGCTTCTTGCCCGTGGGAA
AATGCTTTTATCCCTTTTCCTCCACTCGCCCCAAAATTTTTTTAACGTCG
CATTATTTACAAACAAACCCTCACCCGCTTTTCTTTTTTTGAATACCCCC
AATCTTTTTATTTCTTTGCGTGAGGTACCACCCAACCCCTTCTTTTCTCC
TGCCTCTTACTTAGCTCCCCCACTTTTTTCCAAAACTCTCCCTTTTCGGT
TCGCCCATTTTCTGCCCACCGCATTTTCTTCTTTTATTTTTTCCCGCCCT
TTTTTCCCGTCTTTATCATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_h24.g1 MSMg01no443_h24.g1 CHROMAT_FILE:
MSMg01no443_h24.g1 PHD_FILE: MSMg01no443_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:07 2005
         (332 letters)



>mm_chr13_37562877_37563605
          Length = 729

 Score =  615 bits (318), Expect = e-180
 Identities = 328/332 (98%), Gaps = 3/332 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagaccaggctggccttgaactcagaaatcctcctgcctctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagaccaggctggccttgaactcagaaatcctcctgcctctgcctcccaagtgc 260

                                                                       
Query: 61  tgggattaaaggtgtgtgccaccactgcccagctctacagaagtttctaattccacaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggtgtgtgccaccactgcccagctctacagaagtttctaattccacaaca 320

                                                                       
Query: 121 acttgggggggggggatactctttaaggggacacaggagaaaaacaacaccattgattct 180
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttggggggggg--atactctttaaggggacacaggagaaaaacaacaccattgattct 378

                                                                       
Query: 181 tgtcaacttaagatatcgcttcctcttattgcaaggtattttccattgacagagaagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtcaacttaagatatcgcttcctcttattgcaaggtattttccattgacagagaagaat 438

                                                                       
Query: 241 aacatttattatgacatttagaagactattgggggggggtcctctcctaaatgggcaaga 300
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 aacatttattaggacatttagaagactattgggggggg-tcctctcctaaatgggcaaga 497

                                           
Query: 301 aacacattcttataacaagatgctcccttccg 332
           ||||||||||||||||||||||||||||||||
Sbjct: 498 aacacattcttataacaagatgctcccttccg 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 729
Length adjustment: 9
Effective length of query: 323
Effective length of database: 720
Effective search space:   232560
Effective search space used:   232560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)