BAC Information

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BAC

Clone NameMSMg01-443I10
Chromosome13 (Build37)
Map Location 43,849,518 - 43,849,757
singlet/doubletsinglet
Overlap genenone
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403
Downstream geneCd83, LOC100039432, A730030A06, EG637868, EG667157, Jarid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443I10.T7 (MSMg01no443_i10.b1)MSMg01-443I10.TJ (MSMg01no443_i10.g1)
ACCAG532911AG532912
length781757
length of high quality
(start - end)
---243 (83 - 325)
definitionCHROMAT_FILE: MSMg01no443_i10.b1 PHD_FILE: MSMg01no443_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:09 2005CHROMAT_FILE: MSMg01no443_i10.g1 PHD_FILE: MSMg01no443_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACCCTAAATTTGCGGCGTAAAGAACACATAGTCGAATCCGACGGAANC
NCAAAGTTTTACANNCACCGGGCANGGCCAGAGCCNCNCACCCCGNNCAG
NCGCNCCCCATTTTATCCCGGGCCAGGCGGAACCTAATNACAGAGGGNNC
CAGCAGGCATCATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGCGTTCACCTTTTTACCTCTTCCTACCCCCCCCTTCTCCCCTTTTT
TTTCCACCCCCCTCAACCACCCCCTTTTTTTTTTTTTTCCACCCCTTTTT
CTCTCCTTTCACCCTTTTTTTTTTTTTTTACCGCCGGACCCCCCAACCCC
CCCACGCCCAACATTCTTTCCCTCCCCCCCCTTTCTCTTTTCTTTTTTTT
TATTCCTCCCCTCTTTTTTTTCCCCCCTCCTTTTTTTTTTTTTTCCTTTC
CTATCTTTCCCCCTTTTTTTCCTTTTTTCTCTCCCCCCCTTTTTTTTTTT
TTCCCCCCTTCCCTTTCCTTTCCTTCCCCCCCCAATTTTTCCCCATTTTA
TCCTTTTTACTTTCAATTCTCTTCCCTTTCCTTTTTCTTCCTCTTTTTCG
TTACAATCCCTCCATTTTCTTTATTCCCCCTTTTTTCCCCTCTCCTTTAT
AAATTTTTCCTCCTCCTCCCCTTCTCCCTTAAATTACAACGTCCATCACT
CCTTTCCCCTTTTCCCCTCCCACCTCTTTTTTTCCACCTTTCTTGCCTTA
CCCCTCTCTTTTTTCTCTTCTCTTTTTTCCC
TTTTCTCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTAGACCAGACTGGCCCC
CTTCATGAATCCTGCTCTCTGCTGCCTCTCTCTAAAGTGCTTTCCCATAG
ATCCTGCACACTCTGGTACCAATCAGGGACTCACACGTATTGCTACTAAT
ATTTTCAGAGTTCAGATAGTCACCACACAGCCCATTGGAAAGCTCAGAAG
CCTTTATAAAGATGCTCAATGCTACTTGGTCTGGAGGTTTGTTTCTTTGC
TTATGATAAACCTCTGACATTGATTTTTTATTCCATCTTCCTATTGACTT
TGGAGCTGCGGTGATGGGGAAATAAGTTTTTGCTTGGTGATGATGTTGCT
ATTGAAGTTAGTACCTTTAATCTCAGTCTTCTGTATAGTCATCTCTGGTA
TATATTAAACAAAAAGGGAAGGTTTCATGGTAACACCCCACATAGATAAC
GAAGGGGGAACAATATACACACACACTTCCTCATCTTCGTAGGACAACTC
CTATTTAAATGTTTCTCCTACACGGCAGTGGACCAGCAAGTTTTCACAAA
CCCGCCACAGTACAGACACTTTCCTTTTCCACCTCCCCCTTTCTTTTAGT
TTTTTCACTTCCCCCCCCTGTATTACATCTGCCCCGTTCCTGTCTCCCCA
TATTTCTTTTTCTTATTCCTCCATCCCCCCTTCTTACTTCTTCTCCCTTA
CTCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_i10.g1 MSMg01no443_i10.g1 CHROMAT_FILE:
MSMg01no443_i10.g1 PHD_FILE: MSMg01no443_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:09 2005
         (243 letters)



>mm_chr13_43849316_43849958
          Length = 643

 Score =  410 bits (212), Expect = e-119
 Identities = 233/240 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   agaccagactggcccccttcatgaatcctgctctctgctgcctctctctaaagtgctttc 62
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 203 agaccaggctggcccccttcatgaatcctgctctctgctgcctctctctaaagcactttc 262

                                                                       
Query: 63  ccatagatcctgcacactctggtaccaatcagggactcacacgtattgctactaatattt 122
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 263 ccatagatcctgcacactctggtaccaatcagggattcacacgtattgctactaatattt 322

                                                                       
Query: 123 tcagagttcagatagtcaccacacagcccattggaaagctcagaagcctttataaagatg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 323 tcagagttcagatagtcaccacacagcccattggaaagctcagaagcctttaggaagatg 382

                                                                       
Query: 183 ctcaatgctacttggtctggaggtttgtttctttgcttatgataaacctctgacattgat 242
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctcaatgccacttggtctggaggtttgtttctttgcttatgataaacctctgacattgat 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)