BAC Information

Click to search

BAC

Clone NameMSMg01-443L18
Chromosome13 (Build37)
Map Location 69,713,755 - 69,714,001
singlet/doubletsinglet
Overlap geneSrd5a1
Upstream geneMtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205, LOC218332, Pols, A530095I07Rik
Downstream geneNsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443L18.T7 (MSMg01no443_l18.b1)MSMg01-443L18.TJ (MSMg01no443_l18.g1)
ACCAG533069AG533070
length778744
length of high quality
(start - end)
247 (75 - 321)443 (74 - 516)
definitionCHROMAT_FILE: MSMg01no443_l18.b1 PHD_FILE: MSMg01no443_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:25 2005CHROMAT_FILE: MSMg01no443_l18.g1 PHD_FILE: MSMg01no443_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATTAGTCCTCCTGTCACTATACGANTCACTATTGTTCGAGAATCCGC
GGAATTCTTGTTGTATCGCTACCAGAAGCCAGAGGCACCATGACTCATTG
CTCCCTGCTTCTGACCTACTAGGCACTGTAGCCCCTAACTGTACATGGTG
GATTAGTTTTTGTTTGGCTTTGTCCTTTACCAGGGGACAACACCCTCCCA
TTGCCCTTCCTGAGAACTATGGAACTGCAGGAGAAATAAGGAAAACAATT
CACTTGTATGTGCTCAGAGCAAAGCCACCGGGAAGACAGACACTCAGCTT
ATGGAAGACAACAGCATGGACTTGTTTCTATAGCAGGAATGGAATTAGTA
TTTTTCTTGTTTTGGGGTAATCTTCAAACTTCTCGAGGTACCACCTAAAA
TGAGAGAGAAAAGGTTTAAAGACCAATTCATTTTGCCATTTAAGCATTTG
CGAAGACGGCGAAGATTTCTGACTATGCAAGAAATACCAAGGGTTTTCTT
TTGTATAGTTTAAAAGACTGTGTGAGTGCGTGTGCGCTATTTCTAACCCC
CTCCATTTTCCGCCACATTCCCTCCCCCTTACTTTCTATCCCGTCCTCTC
CTTATTTTTCTCCCCATCCCTTTTTTCTTTTTTTCTTATTCTACCCTTCT
CCCACCCCCATTTTCTCCCCTTCTCTCCTCCGTTCATTCCTTTCCTTGTT
ACTCCACCCACCCCATCCCNTGCTCTCNCCTCCCCCTTACGCCTTTTATA
TTCTCTCCCNTCTTTCGTCCCTCCCCCG
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTGCCGGAATCAAGACAGGAACTAAATCAGGGCAGGAA
CCTGAAGGCAGGAGCTGATGCACAGGCCATGGAGGGTCCCTGCTTACTGC
CTTGCTTCCCATGTCTTTCTCAGTCTGCTTTTGTATAGAACCCAGAACCA
CCAGCCCAGGCATGATATCACCCACAATGGGCTGGGCCCTCCCTCACTGA
TCACTAACTGAGAAAATGCCTTACAGCTGGATCTCATGGAGGCATTTTCT
CCTTTCTCTCAGATGACTCTATTTTTGTGTTGAAGGAAAATGAGATTTTA
TAACTTGTGATTCATGTAAAAGAGTTGTCTATGAGCCCGTGGCCTGGGGC
CGAGAACAAAGCAGAACAGACAGGGCTGTTGTTAAGACATTCCTAAGAAC
ACCTTGACTGTAAAATGAAAAAATACAAGGATAAGCAGGGCTATCTTGTC
TGGGTCAACACCACCTGGCCAGAACCTCCCCTCTGTCTACTGCCCCTTGA
CGCCCAGTAAAGTCATACATCAAGTGGTTGCTTTGTGAACAATATGAAGC
CCCACCCCACAGGAACAAAGCCCCGACGCCCTTTTGCTGACAAGAAAACT
TCCTGTTATTGTGTAAATAACCCAATAATGTTTCTTAGTGGGCCCCTATG
TTGAATTTTTAATTCCCCAACGTTTTTCCCCCCTTAAAAACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_l18.b1 MSMg01no443_l18.b1 CHROMAT_FILE:
MSMg01no443_l18.b1 PHD_FILE: MSMg01no443_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:25 2005
         (247 letters)



>mm_chr13_69713555_69714201
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagccagaggcaccatgactcattgctccctgcttctgacctactaggcactgtagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagccagaggcaccatgactcattgctccctgcttctgacctactaggcactgtagccc 260

                                                                       
Query: 61  ctaactgtacatggtggattagtttttgtttggctttgtcctttaccaggggacaacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaactgtacatggtggattagtttttgtttggctttgtcctttaccaggggacaacacc 320

                                                                       
Query: 121 ctcccattgcccttcctgagaactatggaactgcaggagaaataaggaaaacaattcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcccattgcccttcctgagaactatggaactgcaggagaaataaggaaaacaattcact 380

                                                                       
Query: 181 tgtatgtgctcagagcaaagccaccgggaagacagacactcagcttatggaagacaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtatgtgctcagagcaaagccaccgggaagacagacactcagcttatggaagacaacag 440

                  
Query: 241 catggac 247
           |||||||
Sbjct: 441 catggac 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)