BAC Information

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BAC

Clone NameMSMg01-444C20
Chromosome13 (Build37)
Map Location 79,899,974 - 79,900,210
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666883
Downstream geneLOC666925, LOC382780, EG666933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444C20.T7 (MSMg01no444_c20.b1)MSMg01-444C20.TJ (MSMg01no444_c20.g1)
ACCAG533407AG533408
length1,044740
length of high quality
(start - end)
---442 (75 - 516)
definitionCHROMAT_FILE: MSMg01no444_c20.b1 PHD_FILE: MSMg01no444_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:00 2005CHROMAT_FILE: MSMg01no444_c20.g1 PHD_FILE: MSMg01no444_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACTTTTCTCGTTATGGTGTTGAGACACTACTCAGATGTCTGCACGATG
CAGCACGATCCGCTATGTTTCGGCCACCCGGCCTGTGCCAGCCCCCGTTT
CTCGCCACCGACACCCGCTTCACCCTATGCTGCAATCCAGAGTGCGCCGC
GCCCTGGTGCTTTATATAGCACAACCGCCGTGTCGCCGACGCCCAAGTTC
TGTCACGTCCCGTAGGAGAGTTTGTGTCTAGTAAGCTGCACTGTTGTTAC
TGCTAGACGACTAACTTACGATGCACGCTCATTCCGGAATCGCTACGCTG
CATACTACTGACACGAAATGGACAATACAAGTCGACCCGCTTTTGTGGAA
TCTCCCGCTAAATAATAGGGTCCACTATGCGCAAGCCGACTATTTTATAC
CGTTCATATCATGTGCATGCGTGGCCACCACGAAATCCTATGCCGCTATT
TCCCGTGTTATGATCCGTTCCGCACTTCTTCGGTGCGCCGTATCCGGTGC
AATTGACTCGCTCTGCCTTCAGATGGCCGCCAGATACACCACTCTATATT
TATGTCTTTTTATGACCGTTTCATGTGCATATGTTTTTTGGGCCTATTGA
GCGCTAATCTATGTTTCCGCCACGTCGTGATATGTTAACGCATAGGCATC
GCCATACGACATCGTCGGTTATACATTTCCTCCGTGCGCTGCGTGGCNAC
TCGGCAGCAGTACCAAAATCTTGTGTGCTCGACATATATCCGCGCGCCCG
TACGTTGAATTTCTACGCCATCTTGCCGCTTAGCGATGCTGTGAGCCCCC
GAAACGCCGCCCCCGCACAGAGGGAACGCTGAAAAATCTGCGTTGTCCGC
TTATAGGCCACACCCCCTTCGCCGCGTACTCAAATACAAAATTCACGTCG
CGGCCACCACGTCGCTACAGAGAAATGTATACACAGATCGTATGGTGGAT
GCACGNTCTCGCGATGCAGACGGCTTTATGCCCAGTATCTGGAACGACCA
TCGGCGCCGTCGACAATTCGTGTCGAATGTTGCTGTCGCAACCA
CCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGANATCTATCTGCAGTCTTTTCA
TGCTGGACTTACTATCGTTCAGAAAATAGTGCACCTGGAAGTATATGGAC
ATCATATTTCTGAGTTCCATAAAGAATTAATCCATCAGAATTTCTGATCT
AAAAGTCTCTTAAGTAAGAATTTTAGTCTTAATATTGAAATTCTTAGAGG
CCAGCAGTTTCTGGGACAGGCGAGAGCCAGAGAGCTTCTGAGGTGGCGCC
ATCTTCAGCTCCAGACATTTTTTCACCTTCCTGGTGAGAGAGCAGGGGTC
TGCCCGGCCCGAGAGGTTTCTGCCTCAGGCTCCAGCGGGAGCCACCTTGG
TTCCAGGACTCCGTGGAGGGCAGGCTGCACGGGTGAGTGTGTGGAATACA
GAGGCCAGCAGTTTCTGGGACAGGCGAGAGCCACAGAGCTTCTGAGGCTG
CGCCATCTTCGGCTCCAGACAACCGGTCACCTTCCTGGCCAATGCAACAC
AGCTTCTGGGAAAGATCCTGTTTTGGGCCTTCATCTTCAGCCAGGAGGAG
ATCCAAACTCCAGATAACGGTGCACCTTCCCTGAAAGAGGAGAGCTTGTC
TGCATAGACTGCTCTGACCTTTGATACTCTCATGAGAGAGCTAGTCTCCC
ACATCTGCTTGCTAAAGGTAACTTAATTTTCATATGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_c20.g1 MSMg01no444_c20.g1 CHROMAT_FILE:
MSMg01no444_c20.g1 PHD_FILE: MSMg01no444_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:00 2005
         (442 letters)



>mm_chr13_79899840_79900681
          Length = 842

 Score =  404 bits (209), Expect = e-117
 Identities = 230/237 (97%)
 Strand = Plus / Minus

                                                                       
Query: 7   atctatctgcagtcttttcatgctggacttactatcgttcagaaaatagtgcacctggaa 66
           |||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 371 atctatctacagtcttttcatgctggacttactatcgttcagaaaacagtgtacctggaa 312

                                                                       
Query: 67  gtatatggacatcatatttctgagttccataaagaattaatccatcagaatttctgatct 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtatatggacatcatatttctgagttccataaagaattaatccatcagaatttctgatct 252

                                                                       
Query: 127 aaaagtctcttaagtaagaattttagtcttaatattgaaattcttagaggccagcagttt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaaagtctcttaagtaagaattttagtcttaatattgaaattcttagaggccagcagttt 192

                                                                    
Query: 187 ctgggacaggcgagagccagagagcttctgaggtggcgccatcttcagctccagaca 243
           ||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 191 ctggggcaggcgagagccagagagcttctgaggcggcaccatcttcggctccagaca 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)