Query= MSMg01no444_h01.b1 MSMg01no444_h01.b1 CHROMAT_FILE:
MSMg01no444_h01.b1 PHD_FILE: MSMg01no444_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:20 2005
(576 letters)
>mm_chr13_43033301_43034278
Length = 978
Score = 1091 bits (564), Expect = 0.0
Identities = 574/578 (99%), Gaps = 2/578 (0%)
Strand = Plus / Minus
Query: 1 aactcaggaagacaagccagactaaatattcccttttgaccaatagagaattattggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aactcaggaagacaagccagactaaatattcccttttgaccaatagagaattattggtca 719
Query: 61 atagttagaagatgctagtttgacaaataagtcttctgtatgagtcacagaaaagacctc 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 atagttaaaagatgctagtttgacaaataagtcttctgtatgagtcacagaaaagacctc 659
Query: 121 aacctggaaccagaagctgcagctagtcagccctcagccacacccactggagagaggctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aacctggaaccagaagctgcagctagtcagccctcagccacacccactggagagaggctc 599
Query: 181 acagctcaccaggcaaaagataaaggaacttctaagataaattacattatgacaagaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 acagctcaccaggcaaaagataaaggaacttctaagataaattacattatgacaagaagt 539
Query: 241 ggttggaggagaaaatctgtattaagtactttagcaaaagttgagttgtccaacagatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggttggaggagaaaatctgtattaagtactttagcaaaagttgagttgtccaacagatca 479
Query: 301 ggatctgccttttatgagttcataactcaatgcacatctgtgtgtggtggggagaatatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggatctgccttttatgagttcataactcaatgcacatctgtgtgtggtggggagaatatg 419
Query: 361 aatctactggtcaggcagatatatagaagccaattttcagattcttttgacgataaagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aatctactggtcaggcagatatatagaagccaattttcagattcttttgacgataaagaa 359
Query: 421 gatgtaagggttttagaagaactatttcttggaaccattttttt--ctctattatgtttg 478
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 358 gatgtaagggttttagaagaactatttcttggaaccatttttttttctctattatgtttg 299
Query: 479 gtgtaaactgtagaccactttattaaaaactataaactgtctctttgtttagggcattct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtgtaaactgtagaccactttattaaaaactataaactgtctctttgtttagggcattct 239
Query: 539 gggggatgggaagatgacctgctatcccccctcagagc 576
|||||||||||||||||||||||||||||||| |||||
Sbjct: 238 gggggatgggaagatgacctgctatccccccttagagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 978
Length adjustment: 10
Effective length of query: 566
Effective length of database: 968
Effective search space: 547888
Effective search space used: 547888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_h01.g1 MSMg01no444_h01.g1 CHROMAT_FILE:
MSMg01no444_h01.g1 PHD_FILE: MSMg01no444_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:20 2005
(537 letters)
>mm_chr13_42855960_42856893
Length = 934
Score = 965 bits (499), Expect = 0.0
Identities = 527/537 (98%), Gaps = 3/537 (0%)
Strand = Plus / Plus
Query: 1 ccaagatggacaagaattaattcataccaatctatccctgaatgagatccctacaaaact 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaagatggacaagaattaattcatgccaatctatccctgaatgagatccctacaaaact 260
Query: 61 gttggagaatagcaggtcactactttatatgatgctcagacccaccccgttcactgatcc 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gttggagaatagcaggtcactactttatacgatgctcagacccaccccgttcactgatcc 320
Query: 121 tcaacatactgcaaatggattgacttctgagttattatgtgggttaggatttgccttttt 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tcaacatactgcgaatggattgacttctgagttattatgtgggttaggatttgcc-tttt 379
Query: 181 aagattttatatatatataagtttggagcctaaacctatcaagttatcttgttagttcag 240
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 380 aaga--atatatatatataagtttggagcccaaacctatcaagttatcttgttagttcag 437
Query: 241 ttttaaattcttctcacgaaggcaatgactcatctttgctcttgaaaacatcacacttgg 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttagaaattcttctcacgaaggcaatgactcatctttgctcttgaaaacatcacacttgg 497
Query: 301 aattcatcacttaacacgttacaggggatgtagttaacaatactgtttaggtgccaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aattcatcacttaacacgttacaggggatgtagttaacaatactgtttaggtgccaaaac 557
Query: 361 atttccacttccctttgaaataaatttcttcttaaataatccggtttgcttgagcgcatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atttccacttccctttgaaataaatttcttcttaaataatccggtttgcttgagcgcatg 617
Query: 421 gtgctttaagtcattgacagtcccctttttggcctcttttggaagtgtgaaatgcctgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtgctttaagtcattgacagtcccctttttggcctcttttggaagtgtgaaatgcctgta 677
Query: 481 tacctttgaatgttgtctcatattcctgcagtctcaaggtacccacccctctatcgc 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tacctttgaatgttgtctcatattcctgcagtctcaaggtacccacccctctatcgc 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 934
Length adjustment: 10
Effective length of query: 527
Effective length of database: 924
Effective search space: 486948
Effective search space used: 486948
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
