BAC Information

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BAC

Clone NameMSMg01-446I11
Chromosome13 (Build37)
Map Location 82,338,469 - 82,338,659
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC238756, LOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446I11.T7 (MSMg01no446_i11.b1)MSMg01-446I11.TJ (MSMg01no446_i11.g1)
ACCAG535201AG535202
length711734
length of high quality
(start - end)
63 (235 - 297)193 (116 - 308)
definitionCHROMAT_FILE: MSMg01no446_i11.b1 PHD_FILE: MSMg01no446_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:05 2005CHROMAT_FILE: MSMg01no446_i11.g1 PHD_FILE: MSMg01no446_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCGCTAAACGACCACATATTCCGACCCGCACGGAANCAAGACTA
TTACCCAAGCAGAGCCACCACAGGGGCCNNNCCCCNGGANCCNAACGGAT
TACCCGCCGNANAGCNGGANCNNGNGGAACANCNCCCCACGGAAGCNCCG
GGCGCGGGGAAACNCCAGCCGGNGNCAAGNNGACACAAAANAAGCCAGNA
CACGGAGGAAGGGNNNCNCANNGGCNCCTTTTTTTTTCCCTTCTTCAAGC
ATATAGATACTTGCTAATCTAGTAGCACATGTTGGGGACACTGCTTTTTT
TTTTTTGAAGACACACNCGAGCAAAAGGNCNAANCCNATTTATGGCCCCC
CCCACGACGCCNGANGAAGAAAANNCCANAACCGGAGANAACAACCAACA
GCAACGAAAGCAACGAAAGCCGCACCGAAAGNCACGCCACAACNCAAGCA
CAACACACCCGAAANAAAAACAAGGCGCAAGAAACCCACAGCAGCCACCC
GGACCCACAAAAAAGCAAACAGCGCCAACACCCGAGACANAAAGACACCN
NAAAGCACCGAGGAACCCNCCCCCGCCCGACACGCCCACCCCAAAACCCA
AANACAACCGAACCGCAAAGACCCCCAACCGAGTTTTTTTTTTTTTCACC
AGNCACAGAACAAGCGATTCCAGGGTGCCAAGCACAACTGAATACACTGA
ACACCAAATTN
TGTGTGAGGCCTGGNGGCGCCTGTTTTCGAACCCGGGNGAACTATAGAAG
GTTACAGCACCTGCCCTGAGNATTGACTCATTCCTTGTCCTCAACTATTA
AAACATTTTAACACGAATTAACATCAAATATTATTAGCCCCAAGGCTATC
CACTACAGTCCTGGGCATGCAGAGGGCTGCCTTTGACAAGTTCTGACAAT
TCGAGCTACTCTTCAACTGGGCCATCCTTAACGCCTTTCAGGTTTTTGTT
TGTTTGATTCATTGGTTGGTTTTGTTTTGTTTTAGATATAAATTAGATTG
AACTGATTTTAATAGCTTTATTCTCATTTTAATTTAGTGGCCTCTTTATT
GTTCTTGATCCAAATGCAGTCACAGTTTGAGGTAGTAAAGGGTTTTAACA
TGTGGACCCCCATAGGATACAATTTAGCTTGCAATATTTTTCTTTTCTGC
AAACCTAAAACTCCATTCTGGGAATTATGGCCTTATAGGAAATGAAAGGA
GTACTGTGCAGTGGTGGTACCCACCTTTACTCCATGCCAAGTTGCCTAAT
CTTGCCGAATTGACCCCTATTCTGGTCTACAATGATTTCCCGGTCCGTCC
GCGATCACTTTCCAATCCTTGTTTTGGCCCAATCACACAAGAACAACGTT
TTTTTTTTTTTTTCCATATTCTCTCCACCTTCAAAGTACTCGCATTCTTC
CTTACCCTTTCACACCTTCTCATTTGCCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_i11.g1 MSMg01no446_i11.g1 CHROMAT_FILE:
MSMg01no446_i11.g1 PHD_FILE: MSMg01no446_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:05 2005
         (193 letters)



>mm_chr13_82338269_82338861
          Length = 593

 Score =  308 bits (159), Expect = 2e-88
 Identities = 183/191 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattaacatcaaatattattagccccaaggctatccactacagtcctgggcatgcagagg 60
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 201 aattaacatcaaatattattagccccaaggctatccacaacggtcctgggcatgcagagg 260

                                                                       
Query: 61  gctgcctttgacaagttctgacaattcgagctactcttcaactgggccatccttaacgcc 120
           |||||||||||||||||||||||||| | || ||||||||||||||||||| |||| |||
Sbjct: 261 gctgcctttgacaagttctgacaatttgggccactcttcaactgggccatcgttaatgcc 320

                                                                       
Query: 121 tttcaggtttttgtttgtttgattcattggttggttttgttttgttttagatataaatta 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tttcaggtttttgtttgtttgattcattggttggttttgtattgttttagatataaatta 380

                      
Query: 181 gattgaactga 191
           |||||||||||
Sbjct: 381 gattgaactga 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)