BAC Information

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BAC

Clone NameMSMg01-446K21
Chromosome13 (Build37)
Map Location 16,199,019 - 16,199,235
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670994, EG625121, Gli3, LOC665157, Inhba, LOC625181
Downstream geneLOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446K21.T7 (MSMg01no446_k21.b1)MSMg01-446K21.TJ (MSMg01no446_k21.g1)
ACCAG535317AG535318
length764776
length of high quality
(start - end)
218 (318 - 535)251 (58 - 308)
definitionCHROMAT_FILE: MSMg01no446_k21.b1 PHD_FILE: MSMg01no446_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:17 2005CHROMAT_FILE: MSMg01no446_k21.g1 PHD_FILE: MSMg01no446_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCGCGGAATTCTCAGTCA
TTACATATATATATATACACACACATATATATACATATATATACATACAC
ACACACACACACACATATATATATATATATAAAATGCACCCACTCCTCCA
ACTGCTCAGTGATCATTGAAGAAGAGGAAAGGGACAAAAGGAATGTTAAA
TCAAGAGGAGGTAGAAAGCTACAAGGAAACAGTATCTCTTGATTACGGCA
GCGCAGCTGCACATACACTCACAGTTCTGCAACAGTGATAGCACGAGATA
GCAAACATATTTTTGTTAAATCTTAGCATGGACAGGGGAGGTGGGCATAT
GATGGCACCTCTAGCTGTTGGGAAAGAGCAGGAAGTTGTCTAACTGTGTA
GGCCTCCCCCACCAAAACAATCAGGCAGACTCTGTAGAAGATGTCGTATC
CAAGAATATTTGAGCATCATAAATCACCCTTGGAGGAGGGAAAGAACACA
AAGTTGTGAGACATGAAAGGAGGGTATGAGTCTTGCAAGAGTGAAGAGAT
GAGTGGATGGTAGAAATGAAAATATGCCGTCTACAACTCTTACACATATA
TATTTACCCCTTTTCCCACTCCCAAATATATCCTAATACACTCATCCGGA
TTTTTTTCTTCTACGAATATACACCCTTTATTATCTATAAGGCTTCGCCT
ACCCCTTTTTTGGCTCGGACTGTACCCCTCCAATTTTTATTCCCCCCTTC
ACTCCTCTCGTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCAGAAATTCCGTATATTGAACCATCCCTGCATCCCTGGGATGAAACCT
ACTTGTTCAGCATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGC
GAGAATTTTATTGAGGATTTTTGCATCAATATTCATAAGAGAAATTGGTC
TGAAGTTCTTTATCTTTGTTGGATCTTTCTGTGGTTTATGTATCAGAGTA
ATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTTTGTGAAATAGTT
GGTGCAGTATCTTGAATTAGATCTTCTCTGAAGGTCTGATAGAACTCTGC
ACTAAACCCATCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATAA
CTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGATGGTCAACTTGA
TCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTC
ATCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGA
TGGTGTTTTGGATTTCTTCACGATCTGTTGGTACGTCTCCCTTTTCCTAT
TCCGATTTGGTAATTAAGAAGCCTTTCCCTGGCCCCCCACTGAGCTTTTT
TTTTTTTTTTTCCTACCCGGCGAACACTTCTAAGAACACTACTTCCTCAC
CTTTTCGGCATTCCTGCATTGATCCTTCCTTGTCCTTCTCGCTTCGCATT
CCCCCTCGTATTCTTTATATCTTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_k21.b1 MSMg01no446_k21.b1 CHROMAT_FILE:
MSMg01no446_k21.b1 PHD_FILE: MSMg01no446_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:17 2005
         (218 letters)



>mm_chr13_16198819_16199435
          Length = 617

 Score =  393 bits (203), Expect = e-114
 Identities = 215/219 (98%), Gaps = 3/219 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatcttagcatggacaggggaggtgggcatatgatggcacctctagctgttgggaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatcttagcatggacaggggaggtgggcatatgatggcacctctagctgttgggaaaga 260

                                                                       
Query: 61  gcaggaagttgtctaactgtgtaggcctcc-cccaccaaaacaatcaggcagactctgta 119
           ||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||
Sbjct: 261 gcaggaagttgtctaactgtgta-gcc-cctcccaccaaaaaaatcaggcagactctgta 318

                                                                       
Query: 120 gaagatgtcgtatccaagaatatttgagcatcataaatcacccttggaggagggaaagaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaagatgtcgtatccaagaatatttgagcatcataaatcacccttggaggagggaaagaa 378

                                                  
Query: 180 cacaaagttgtgagacatgaaaggagggtatgagtcttg 218
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacaaagttgtgagacatgaaaggagggtatgagtcttg 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 617
Length adjustment: 9
Effective length of query: 209
Effective length of database: 608
Effective search space:   127072
Effective search space used:   127072
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)