BAC Information

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BAC

Clone NameMSMg01-448C11
Chromosome13 (Build37)
Map Location 45,126,258 - 45,126,503
singlet/doubletsinglet
Overlap genenone
Upstream geneA730030A06, EG637868, EG667157, Jarid2, Dtnbp1
Downstream geneHsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448C11.T7 (MSMg01no448_c11.b1)MSMg01-448C11.TJ (MSMg01no448_c11.g1)
ACCAG536435AG536436
length7601,024
length of high quality
(start - end)
247 (64 - 310)---
definitionCHROMAT_FILE: MSMg01no448_c11.b1 PHD_FILE: MSMg01no448_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:19 2005CHROMAT_FILE: MSMg01no448_c11.g1 PHD_FILE: MSMg01no448_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTCCTTCCCATTCATGTGAGGAACAGCAGCAACAGCCAGACGCCAGCAGC
TGGTGACAGCAGCGTCCTTGGCAGCTGATGTGAGCTGCAGCGCCCCCTGC
AGGCCCTCAGAGATGCAACGCGGTGTCAAGACCGCATCCTGGCTACCAGC
TCTCAGGCTGCTGAGGTCTGCCCTCTGCTGACGATGGATACTAACTACAC
TTTTTAAAACACTTGTCTTTCTCAGTGCAAGGGACCCCATTCAGATAAGG
TGCCCTTTTTTTGTGGCTGGTAGACCAAGTCTCTACTTTGTATTTCTACA
GACTAAACTCATGGACCCCCAGGTATCACAAAAACGAAAGCCATACACAT
TCATGAACCTACGTTCAAGTCTTGTCTCTTATTATGAATCTTTTGCCCCC
CTTCCGAAATTTATGACCCGCCGATATCTATCGCTAACTTCCTCCTTACC
CGCATTTGCTTGCTGTTTCCTATTCTACTTCCTCTTCCCTCCCCGCCGTA
CCGGCTACTTCGCGTGTGTTACGCCCTCATAACCTATATGCCCTTTTATT
TCCCCTCACTGCCACAAATTTTTGTGTTTCCGCCCTGCCCATTCCTTTTT
GCCTTCCTTGAACCCACTTTTGCTTCCCATTCTATTGTTTTCTAGTCCCT
CCCCCTCTTGACTTTAAATTTCACCCATCGGTCAACTCTTTTCCGCTCCC
CCCTCTCTTT
TCCAATATAGAAAGAGGGCAGAGGGGAGAAGGGCCGGGGTGTTTTCATTA
TAACAAATGTCCCCTCCACTAGTACTTTCCCCCGCCCAACCCCGCGGGCC
GTATGTACACTGGGGGACGCGCCTGATAGGGGAGTAGCGCCGCAGCCGGG
CGAGATGGACGCCCCTAGTGGTTCTTTGATCATAAAAAGTAGAGAGATAT
CTCACTCCCCATCGATGTCTCAAAGACACGAACAGTTTGCCGGGCGCGTG
GCGCTATGCTCCGGTATCTAGATATAACATTTAACGTTGAAACAAGGCGC
GGGCGATCTCTTCCTCCTGCGGTAAGGCTATTGAGGAAAATCAATAGCGG
GATGCGAATACGATTTATACGGGCCCGTACCCTTAAAGATGATTTAGATT
TAATCCACACTTCTGCCCCTAGCAGAAGCCAAAAGTTGGCAAAAGAGAGC
GAAGGCGAAAGAAAAGAAAGAAAGAGAACCCCATGCCCCCAGATTAGTAC
CGCGTTCCTTTGTTCACCCCGCCTTATATTTGTGTCGACGGGCGATACCA
CACCCGATTCAGAATAAAAGGCCTTGTTTTCACCGAGCGATATATTAATC
AGACGAGTGCTGAGAGAGATAAGGCAACTGTGTAAGGTAGCCATAATGTT
AGTACCCCAACGACCTCTTTGTAGGAGGATCGATTGGGTACATAATTGGT
GAACGACAAAAAGAAAAAACAATTCGACGGGCGCAACGCACCATGGTAAT
AATAATTATGCCACGAAGTAGAGACAACAAAAACTGCGCATGTGTGCATA
ACCCCCCCACACAGTTGTGGAAGGTAGCTCAGAGCAGCACTGAGTAGTTG
TTGTTTACACGTTGTGCGCGCACGCTCGTTGTATATCAAGCTGCGGTGAC
CAAAATATCAGAATACAAACCAAAAAAAACGAGTCTCGCGCCCGCCACCG
CGGCGCAAAACACCTGTACGCCACTCCCCGCATGTGATAGTAAATAGCCC
GCCGCATCACGCCGCGCATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_c11.b1 MSMg01no448_c11.b1 CHROMAT_FILE:
MSMg01no448_c11.b1 PHD_FILE: MSMg01no448_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:19 2005
         (247 letters)



>mm_chr13_45126058_45126705
          Length = 648

 Score =  414 bits (214), Expect = e-120
 Identities = 238/246 (96%), Gaps = 1/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtgaggaacagcagcaacagccagacgccagcagctggtgacagcagcgtccttggca 60
           ||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 446 atgtgaggaacagtagcaacagccagaagccagcagctggtgacggcagcgtccttggca 387

                                                                       
Query: 61  gctgatgtgagctgcagcgccccctgcaggccctcagagatgcaacgcggtgtcaagacc 120
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 386 gctgatgtgagctgcagcgccccctgcaggccctcagagacgcaacgcggtgtcaagatc 327

                                                                       
Query: 121 gcatcctggctaccagctctcaggctgctgaggtctgccctctgctgacgatggatacta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 326 gcatcctggctaccagctctcaggctgctgaggtctgccctctgctgacgatagagacta 267

                                                                       
Query: 181 actacactttttaaaaca-cttgtctttctcagtgcaagggaccccattcagataaggtg 239
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 actacactttttaaaacaacttgtctttctcagtgcaagggaccccattcagataaggtg 207

                 
Query: 240 cccttt 245
           ||||||
Sbjct: 206 cccttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space:   152082
Effective search space used:   152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)