Query= MSMg01no448_l23.b1 MSMg01no448_l23.b1 CHROMAT_FILE:
MSMg01no448_l23.b1 PHD_FILE: MSMg01no448_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:08 2005
(454 letters)
>mm_chr13_23798633_23799481
Length = 849
Score = 824 bits (426), Expect = 0.0
Identities = 445/454 (98%), Gaps = 5/454 (1%)
Strand = Plus / Plus
Query: 1 taaccatatctccagaagccgctggtactgttgtcttcatgcacctcacagcctaggacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaccatatctccagaagccgctggtactgttgtcttcatgcacctcacagcctaggacc 260
Query: 61 acctgcaggatgtgggactcggacaccactcccaacttcgtgactggaaataaaaaggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctgcaggatgtgggactcggacaccactcccaacttcgtgactggaaataaaaaggtt 320
Query: 121 ggttttgtcttcaccatctccaagtatcgaatgatctgaggcacacaactatctccctct 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ggttttgtcttcaccatctccaagtatcgagtgatctgaggcacacaactatctccctct 380
Query: 181 cgatttccccccacctcaaccccaggatctcacttcaagatatgatacaggataattgaa 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatttccccc-----caaccccaggatctcacttcaagatatgatacaggataattgaa 435
Query: 241 cctatttctagtttgtggggctgagcacacatctttaatccctctgtctataacacagac 300
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 436 cctatttctagtttgtggggctgagcacacatcttcaatccctctgtctagaacacagac 495
Query: 301 tcaccctactattcgagtttaatcccaaacaacaaaggtaaagttagtttgtagaaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tcaccctactattcgagtttaatcccaaacaacaaaggtaaagttagtttgtagaaggaa 555
Query: 361 gcactcatatttgaaagtgatgtctgattaagaggcagatgaagtgacaaatcagagttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gcactcatatttgaaagtgatgtctgattaagaggcagatgaagtgacaaatcagagttg 615
Query: 421 acagaaaaggatatgcccaactgtcacaagaaga 454
||||||||||||||||||||||||||||||||||
Sbjct: 616 acagaaaaggatatgcccaactgtcacaagaaga 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 849
Length adjustment: 10
Effective length of query: 444
Effective length of database: 839
Effective search space: 372516
Effective search space used: 372516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_l23.g1 MSMg01no448_l23.g1 CHROMAT_FILE:
MSMg01no448_l23.g1 PHD_FILE: MSMg01no448_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:08 2005
(425 letters)
>mm_chr13_23976508_23977331
Length = 824
Score = 710 bits (367), Expect = 0.0
Identities = 420/457 (91%), Gaps = 35/457 (7%)
Strand = Plus / Minus
Query: 1 aaggcatgtaatccccttactgattaaaatagccaaaataattgaaattgc--------- 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aaggcatgtaatccccttactgattaaaatagccaaaataattgaaattgctgctgcagc 603
Query: 52 ---------------------tgctgcagctgccgtaggagatggcattgctgccttaca 90
|||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgccgtagaagatggcattgttgctgcagctgccgtaggagatggcattgctgccttaca 543
Query: 91 gcatcacagatcatcttaagaatctgcttgtaacatctgctcttatcaccccaaaggctt 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gcatcacagatcatcttaagaatctgcttgtaacatctgctcttatcaccccaaaggctt 483
Query: 151 ggctgctaccatgttcccaggccttccctgtctcactcaatcttctcttaatgttttcat 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggctgctaccatgttcccaggccttccctgtctcactcaatcttctcttaatgttttcat 423
Query: 211 gaaaccacatttgcatgactcttcttcctctcagaattttctttgctgtaacaaggaatt 270
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 422 gaaaccacatttgcatgactcttcttcctctcagaattttctttgctgtaac-aggaatt 364
Query: 271 taaagtccattggaatgatgcagtttagggcaagttagatgtggtcaccttacatgctgc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 taaagtccattggaatgatgcagtttagggcaagttagatgtggtcaccttacatgctgc 304
Query: 331 tgggcgctgccagacagcaccactgaggccagggctgactgtagcaagtctctgcagaaa 390
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 303 tgggcgctgccagacagcaccactgaggccagggctgactatagcaagtctctgcagaaa 244
Query: 391 aaaa-aaaaa-aaaaacaacaacaaaaaaaacccagc 425
|||| ||||| || ||||| || ||||||||||||||
Sbjct: 243 aaaacaaaaacaacaacaa-aa-aaaaaaaacccagc 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 824
Length adjustment: 9
Effective length of query: 416
Effective length of database: 815
Effective search space: 339040
Effective search space used: 339040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
