BAC Information

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BAC

Clone NameMSMg01-450E03
Chromosome13 (Build37)
Map Location 14,225,881 - 14,226,123
singlet/doubletsinglet
Overlap geneArid4b
Upstream genePrl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243
Downstream geneLOC100039916, Hecw1, Mrpl32, Psma2, AW209491, EG665099, LOC670994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450E03.T7 (MSMg01no450_e03.b1)MSMg01-450E03.TJ (MSMg01no450_e03.g1)
ACCAG538031AG538032
length727781
length of high quality
(start - end)
271 (53 - 323)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no450_e03.b1 PHD_FILE: MSMg01no450_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:07 2005CHROMAT_FILE: MSMg01no450_e03.g1 PHD_FILE: MSMg01no450_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTACGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTACCTCTGAGCCCCAGTTTTGAATGGGGTTAT
TTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGAATATT
AGTCCCCTATCTGACTTAGAATAGGTAAATATCCTTTCCCAATCTGTTGG
TGGTCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTACAGAAGCTTTGCA
ATTTTATGAGGTCCCATTTGTCAATTCTTGATCCTACAGCACAGGCCATT
GCTGTTCTGTTCAGGAATTTTTTTTTTGTGCTCATATCTTCGAGGCTTTT
CCCCACTTTCTCCTCTATAAGTTTCACTGTCGCTGGTTTTATGTGGAGTT
CCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCA
ATTCACATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTT
GAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGGTCCCTTGTCGAAGA
TCAAGTGATTATAGGTGTGCGGTTTCATTTCTGGGTCTTCTATTCCATTC
CATTGGTCTACTTGCCCGTTGCCATACTCGTAACTTGCCGGGCCTTACCC
TACTTGTTCTTTTTCCCTATTCTTACTTATCCTGCTCGTTTCCTCTTTTG
TTTTTCTATTTCCCCCCTCCTTTCCCG
GGCAATGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCCAGAGCTTGAGTCCGAATACAGAG
TAACATGACTATGCAAGGTCCAGGTCCTTCTCTCAGAAGTGGTTGATAGA
CAGTGTCACTGAACTGTCACACATCTGTCCTCTTTGTTTAGAAGAACGTT
TGTTACAGGACACTTTAGATCATTTACTTACATAGTAGACCATTTTTTGT
TTGATTATATTTATGCTTCCTTCAGCAATTGAAATTTCATTTTTATTTTA
AATTTCTCATAGTTTACCATTCCTTATTCTTCTTAGTAGACAGCTTATTT
CCAGATTATGGTTTGTACTGTCTTGTCTTGGTTTCTGTTGAGCCTACTTG
ATAGAATCTTCTCTTAACGACACAAGAAATGCTTTTTCCTATATAATATA
TTTCATGCGCTTTTTGCCCATTATATTATCTTACCCTTTATTTTTTGCGC
TTCCCTTGAGTGTTCTTGCTTTGTCGTCTTTTTGTCACTTATGTGCTTTA
TTCCTTTTACTCTGTTTTTATCCACTTCTCCTCTTCCCTCTGCTGCCTCT
TCCCTTCTCCTTTTAGCTTTTTCTCCTATCACTTCTTTTCCTCTTCTACT
TATTGCTTCTTTTTTTTTTTTCTTTCTTTTTTTCTTCTCTTCTTTTTTCT
TTTTCCTCTTTTTCCTCCTTCTTTCTTTTCTCTTTTTCCCCTTTCCCTTT
CTCTTATTTCCTTTCTCTTCCTTCCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_e03.g1 MSMg01no450_e03.g1 CHROMAT_FILE:
MSMg01no450_e03.g1 PHD_FILE: MSMg01no450_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:07 2005
         (244 letters)



>mm_chr13_14225681_14226324
          Length = 644

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagcttgagtccgaatacagagtaacatgactatgcaaggtccaggtccttctctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagcttgagtccgaatacagagtaacatgactatgcaaggtccaggtccttctctcag 260

                                                                       
Query: 61  aagtggttgatagacagtgtcactgaactgtcacacatctgtcctctttgtttagaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtggttgatagacagtgtcactgaactgtcacacatctgtcctctttgtttagaagaa 320

                                                                       
Query: 121 cgtttgttacaggacactttagatcatttacttacatagtagaccattttttgtttgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 321 cgtttgttacaggacactttagatcatttacttacatagtagaccattttttgtttgaaa 380

                                                                       
Query: 181 atatttatgcttccttcagcaattgaaatttcatttttattttaaatttctcatagttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatttatgcttccttcagcaattgaaatttcatttttattttaaatttctcatagttta 440

              
Query: 241 cca 243
           |||
Sbjct: 441 cca 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)