BAC Information

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BAC

Clone NameMSMg01-450O14
Chromosome13 (Build37)
Map Location 96,500,753 - 96,500,994
singlet/doubletsinglet
Overlap geneIqgap2
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, F2rl2
Downstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450O14.T7 (MSMg01no450_o14.b1)MSMg01-450O14.TJ (MSMg01no450_o14.g1)
ACCAG538525AG538526
length849733
length of high quality
(start - end)
159 (75 - 233)242 (83 - 324)
definitionCHROMAT_FILE: MSMg01no450_o14.b1 PHD_FILE: MSMg01no450_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:59 2005CHROMAT_FILE: MSMg01no450_o14.g1 PHD_FILE: MSMg01no450_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAGAGATCCGC
GGAATTCAGGCTTGTCTGAGCCACAGAGCAAGTTTAAAAAAAAAAAATAG
TTCAACTGGAGGTTGGAGAGATGTCTAAGTCAGTAAAGTGCTTGTCTGGC
AAACATGAAAGTCTGATTTCAAGCCCTAGAGCCTGTGTCAAAAAAGAGGA
GGAGGGGGAGAAAGGAGGAGAAGGAGGAGGAGTAGAATCTTCTCCCTCGT
CTTTTTTTCTCTCTCCTGTTCCTCGTCGTCCGCCTTCCGTTTTCTGTTCC
CCACCCCTCTCACTCTCGTTTTTTTTTTTTCCGCCGACCACTCCTTCCAT
TCTTTCATCTTACCTTTTTCTTCTTCTTTCCCTTTTATCCCTTTTCCTCA
TTTCCCCCCCCCCTCTTTTCTCCTTTTCCCCTCCTCCTTTCTTCTTTCCT
TTTCCCTTTTTTCCCCCATATTCTTCTCCCTTTCCCCTTCTTCTTCTTTC
CCCTCTCCCTTCCTTTCTCGTCCTCCTTTTTCTCATTCTCTCTTTTACCT
CACTTTTTCTTCTTTTATTTTGTATCCCTTTACGTTTTTCTCATTCCTTT
CCCCTTCCTCTTCTCCCTCCTTCTCCCTTTCTTATCTTTTTCTTTTTCAT
TTCTTCCTTTCTTACTCCACCTACATCCTTCTCTCCTTTCTTTCTTCTCC
CCATATCTCCCCCTTTTTTCCTTCTTTCCTTCTCTCTTTTTTTTATTCCC
ACCTTCTCCTCTTTCCTACCCCCTCTCTATCCTATTTATCCTATCCCATT
CCCCTTCTCCTCCCCCTTTTTCATTCCCTTATTTTCTTTTCCCCGCCCT
NCCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACAGAAGGAGGAAGAA
GGAAGAGACTCCAAGGTCAATGCTGAGAACTGTAACATCCAAGACTTCCA
CCAGGCAGGGAACAGAGCCTCTCTGGGTAGGTGGGCCACTGACATGCTGA
AAGCCACCAGGCAGGGAAAGGTCATCAAAGAAGTAATGGAGCTCAGAGCT
CAATGAGGGAAGTGTTGATGTGGAATACAAGTTTCAGTGTGGACGAAGTT
GTCTACCAAGACGGTCCAGGGATGATCTGTTATCTGCTATCTCTAAGTCT
ATAACATGATATTCATTCTTTTAGTGTCCATCATGAAAGAATATATTATG
TTACTTAATTTAGGGTCTTCTAACTCTTCAATCCCACCCAAATCAAGAAA
AACCACAGCCAGTTGATTTACAAATCATCTCGGTCAACATTAGTAACAGC
TTTTCGCGCTAGGAACTCATAGCCATATCATTAGTGCATGGATCACCCAG
ACTTCAACTAAGTACCTTCAGTTTTGCGCTTTCCTCTTTTTTCTTTTTGG
CTTCCCACAGTTCTTTCTGGTACTCCTGTGAGAGGCTGTCGTCCACACAA
GTTAACACTGCGTTGTTTTTTCCTACCCGCATAATGTGCTGCTCGCCCCC
TCCCCTCTCAATATCTTTCTTACCACCTTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_o14.g1 MSMg01no450_o14.g1 CHROMAT_FILE:
MSMg01no450_o14.g1 PHD_FILE: MSMg01no450_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:59 2005
         (242 letters)



>mm_chr13_96500553_96501194
          Length = 642

 Score =  468 bits (242), Expect = e-136
 Identities = 242/242 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacagaaggaggaagaaggaagagactccaaggtcaatgctgagaactgtaacatccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacagaaggaggaagaaggaagagactccaaggtcaatgctgagaactgtaacatccaa 260

                                                                       
Query: 61  gacttccaccaggcagggaacagagcctctctgggtaggtgggccactgacatgctgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacttccaccaggcagggaacagagcctctctgggtaggtgggccactgacatgctgaaa 320

                                                                       
Query: 121 gccaccaggcagggaaaggtcatcaaagaagtaatggagctcagagctcaatgagggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaccaggcagggaaaggtcatcaaagaagtaatggagctcagagctcaatgagggaag 380

                                                                       
Query: 181 tgttgatgtggaatacaagtttcagtgtggacgaagttgtctaccaagacggtccaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttgatgtggaatacaagtttcagtgtggacgaagttgtctaccaagacggtccaggga 440

             
Query: 241 tg 242
           ||
Sbjct: 441 tg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)