Query= MSMg01no452_k12.b1 MSMg01no452_k12.b1 CHROMAT_FILE:
MSMg01no452_k12.b1 PHD_FILE: MSMg01no452_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:16 2005
(632 letters)
>mm_chr13_95291802_95292834
Length = 1033
Score = 1131 bits (585), Expect = 0.0
Identities = 622/635 (97%), Gaps = 6/635 (0%)
Strand = Plus / Plus
Query: 2 tgtgttcagacctgcctgcaaa-aatttttttagttttactttttgtgcatgagtctttt 60
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgttcagacctgcctgcaaacattttttttagttttactttttgtgcatgagtctttt 260
Query: 61 gcttgcttatatgtctgtgtaccacatacatgcctggtggtcacagtggtcacaagaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttgcttatatgtctgtgtaccacatacatgcctggtggtcacagtggtcacaagaaag 320
Query: 121 ctttgtatcccctggaactggagtgataaatggtgtgagacaccatgtggatgctgggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgtatcccctggaactggagtgataaatggtgtgagacaccatgtggatgctgggaa 380
Query: 181 tgaaatccaggacctctggtggagcaatagtgctctgaaccatggctctctgcctctcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaatccaggacctctggtggagcaatagtgctctgaaccatggctctctgcctctcca 440
Query: 241 gcccttccgaacagagtttttaaaagatgtgttgattattacaaaaataaatgaagaagc 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gcccttccgaacagagtttttaaaagacgtgttgattattacaaaaataaatgaagaagc 500
Query: 301 cttgctttttcataatctgtactcattactcaaaatattggaaattatcacaattgcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgctttttcataatctgtactcattactcaaaatattggaaattatcacaattgcatt 560
Query: 361 ctacatcagtcagatttacatgcctaactaagaagttgtccttaagacaacg-ga-catt 418
||||||||||||||||||||||||||||||||||||| ||||||||||| | || ||||
Sbjct: 561 ctacatcagtcagatttacatgcctaactaagaagttctccttaagaca--gtgaacatt 618
Query: 419 agtttaatgttctttggaaggttccagtatatttctttgactctgtgtgtccagataggg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agtttaatgttctttggaaggttccagtatatttctttgactctgtgtgtccagataggg 678
Query: 479 -ttcagcaacccctggcctatactggtgctgttcagtgcagtgagctggagatgcagtag 537
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 679 gttcagcaaaccctggcctatactggtgctgttcagtgcagtgagctggagatgcagcag 738
Query: 538 gctcactttgtgtatttactaagcaaatcaatattgaggttctctgccatgtaattctta 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gctcactttgtgtatttactaagcaaatcaatattgaggttctctgccatgtaattctta 798
Query: 598 ccaatcgaaacgtattggcttaaaaagcactaatg 632
||||||||||||| |||| ||||||||||||||||
Sbjct: 799 ccaatcgaaacgtgttggtttaaaaagcactaatg 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space: 636306
Effective search space used: 636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_k12.g1 MSMg01no452_k12.g1 CHROMAT_FILE:
MSMg01no452_k12.g1 PHD_FILE: MSMg01no452_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:17 2005
(617 letters)
>mm_chr13_95429973_95430989
Length = 1017
Score = 996 bits (515), Expect = 0.0
Identities = 539/547 (98%)
Strand = Plus / Minus
Query: 1 attctccttgtgtgcatcaggttggttttttgtttttgctttgttttaatttgttttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 attctccttgtgtgcatcaggttggttttttgtttttgctttgttttaatttgttttgtc 492
Query: 61 attgctgtagtttttattttttaccaaaagtataaaacatctcctgaattcgtgcttccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 attgctgtagtttttattttttaccaaaagtataaaacatctcctgaattcgtgcttccc 432
Query: 121 cgcccgccttggtggtacatggctatgacaaaaggcagatgtaaggcagtgggaagtcag 180
|||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 431 cgcccgcctttgtggcacatggctatgacagaaggcagatgtaaggcagtgggaagtcag 372
Query: 181 aagcttcatccatccaagccaagcactgagaaaactttgagaagcagagaacgattgtac 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 371 aagcttcatccatccaagccaagcactgagaaaacttcgagaagcagagaacgattgtac 312
Query: 241 caagagacacttcaaaatctgattacattctgcctggagaggtggctcagaggttcagat 300
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 311 cgagagacacttcaaaatctgattacattcggcctggagaggtggctcagaggttcagat 252
Query: 301 tgctggccgctgctcttccattcctagcacccacatggccactcacagccatcttcaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgctggccgctgctcttccattcctagcacccacatggccactcacagccatcttcaatt 192
Query: 361 acagctccaggggatctgacgctatctcttggcctcttcaagcactgcatgcacatggta 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 191 acagctccaggggatctgacgctatctcctggcctcttcaagcactgcatgcacatggta 132
Query: 421 cccagacacatttaggcaaacttacatatattatgaaagtaaatacaatttcaaaaaagt 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 131 cccagacacatttaggcaaacttacatatattatgaaagtaaatacgatttcaaaaaagt 72
Query: 481 tttaacttaaaaaatcttattacgggacaggacccttcctgctcctggagctgaccctgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tttaacttaaaaaatcttattacgggacaggacccttcctgctcctggagctgaccctgt 12
Query: 541 gccacag 547
|||||||
Sbjct: 11 gccacag 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
