BAC Information

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BAC

Clone NameMSMg01-452O15
Chromosome13 (Build37)
Map Location 20,254,058 - 20,254,695
singlet/doubletsinglet
Overlap genenone
Upstream geneTcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452O15.T7 (MSMg01no452_o15.b1)MSMg01-452O15.TJ (MSMg01no452_o15.g1)
ACCAG540053AG540054
length749755
length of high quality
(start - end)
536 (180 - 715)642 (75 - 716)
definitionCHROMAT_FILE: MSMg01no452_o15.b1 PHD_FILE: MSMg01no452_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:37 2005CHROMAT_FILE: MSMg01no452_o15.g1 PHD_FILE: MSMg01no452_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTAATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGG
AATTCTTTGGTTTCTCCATCTATGGTAATTGAGAGTTTGGCCGGGTATAG
TAGCCTGGGCTGGCATTTGTGTTCTCTTAGTGTCTGTATAACATCTGCCC
AGGCTCTTTTGGCTTTCATAGTCTCTGGTGAAAAGTCTGGTGTAATTCTG
ATAGGTCTGCCTTTATATGTTACTTGACCTTTCTCCCTTACTGCTTTTAA
TATTCTCTCTTCATTTAGTGCATTTGTTGTTCTGATTATTATGTGTCGGG
AGGAATTTCTTTTCTGGTCCAGTCTATTTGGAGTTCTGTAGGCTTCTTGT
ATGTTCATGGGCATGTCATTCTTTATGTTTGGGAAGTTTTCTTCTATAAT
TTTGTTGAATATATTTGCTGGCCCTTTAAGTTGAAAATCTTCATTCTCAT
CAACTCCTATTATTCGTAGGTTTGGTCTTCTGATTGTGTCCTGGCTTTCC
TGGATGTTTTGAGTTAGGATCTTTTTGCATTTTGTATTATCCTTGATTGT
TGTGCCGATGTTCTCTATGGAATCTTCTGCACCTGAGATTCTCTCTTCCA
TCTCTTGTATTCTGTTGCTGATGCTCGCGTCTATGGTTCCAGATTTCTTT
CCTAGGGTTTCTATCTCCAGCGTTGCCTCACTTTGGGTTTTCTTTATTGT
GTCTACTTCCCTTTTTAGGTCTAGTATGGTTTTGTTCATTTCTATCACN
ACCATGCAGTGGGAGGCCTGGCGGCCGCCTGGTTCAAAAATGGGGGTGAC
ACTATAGAATTTCCCGCAGAATTCTCTGAAGAACCAAACTGAACCAAACT
GACACATCAACATGGGTGAAACCAAAAGTGTGATGCTGATGTTAAGCAAA
CCACTGATATTTTTCTTGGAGGGGGGAGGATTGCATTTTTTAAAGTTGAA
AAATGTATTCTTTGTATTTACGTAACCTTAAAGAAAAGTTTTTTTAAAAA
GTCACTAAAATAGTATTCTGAGTCATTCTTATTTGAATCACTTACTGGTG
ATGATCTATGTATTATGCTGTGTTGTCAGAATCAAGATATGTGTCTCTTT
TAATGTATTTGCATACTCATTGAAAATTCAAATTCCATCACCATTTATTA
TCAATTGTAGCTTTTGGTTTTGATTTGCCAGGAAAGTTTACTTATGTAAA
GCAAGAAACAAGCATAACAAAGAAGGAGGCCTCCCTACACTAATAAATAT
GAAAAAACCCTTATGCTCCCTTGAATGTATTTAAATTAGTAGTAGCACTG
TCTCAAGATACTCTGAGCAGTGTAGAAGTCTCTAATGGGCTACAGAGTCA
CATCCTTCCCAAAGGGGTAAAGGCACAGAGTTCCCAAAGATGTACAGCTA
AGCAACTCGCAATAGCACAGCACTGGGTAGCTGCAGTCTCTCCAGGCACC
TCTCTCATCTCTTAGGTTCTTTCCCTGAGATGCCCTCATTGCCCTTGGCT
TCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_o15.g1 MSMg01no452_o15.g1 CHROMAT_FILE:
MSMg01no452_o15.g1 PHD_FILE: MSMg01no452_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:37 2005
         (642 letters)



>mm_chr13_20253858_20254895
          Length = 1038

 Score = 1125 bits (582), Expect = 0.0
 Identities = 627/644 (97%), Gaps = 8/644 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaagaaccaaactgaaccaaactgacacatcaacatgggtgaaaccaaaagtgtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tctgaagaaccaaactgaaccaaactgacacatcaacatgggtgaaaccaaaagtgtgat 779

                                                                       
Query: 61  gctgatgttaagcaaaccactgatatttttcttggaggggggaggattgcattttttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gctgatgttaagcaaaccactgatatttttcttggaggggggaggattgcattttttaaa 719

                                                                       
Query: 121 gttgaaaaatgtattctttgtatttacgtaaccttaaagaaaagtttttttaaaaagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gttgaaaaatgtattctttgtatttacgtaaccttaaagaaaagtttttttaaaaagtca 659

                                                                       
Query: 181 ctaaaatagtattctgagtcattcttatttgaatcacttactggtgatgatctatgtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ctaaaatagtattctgagtcattcttatttgaatcacttactggtgatgatctatgtatt 599

                                                                       
Query: 241 atgctgtgttgtcagaatcaagatatgtgtctcttttaatgtatttgcatactcattgaa 300
           | ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 598 aggctctgttgtcagaatcaagatatgtgtctc-tttaatgtatttgcatactcattgaa 540

                                                                       
Query: 301 aattcaaattccatcaccatttattatcaattgtagcttttggttttgatttgccaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aattcaaattccatcaccatttattatcaattgtagcttttggttttgatttgccaggaa 480

                                                                       
Query: 361 agtttacttatgtaaagcaagaaacaagcataacaaagaaggaggcctccctacactaat 420
           |||||||||||||||||||||||||||| ||||||   |||||||||| |||||||||||
Sbjct: 479 agtttacttatgtaaagcaagaaacaagaataaca---aaggaggcctgcctacactaat 423

                                                                       
Query: 421 aaatatg-aaaaaaccct-tatgctcccttgaatgtatttaaattagtagtagcactgtc 478
           ||||||| ||||||||||  ||  |||||||| |||||||||||||||||||||||||||
Sbjct: 422 aaatatgaaaaaaaccctaaat--tcccttgagtgtatttaaattagtagtagcactgtc 365

                                                                       
Query: 479 tcaagatactctgagcagtgtagaagtctctaatgggctacagagtcacatccttcccaa 538
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 364 tcaagatactctgagcagtgtagaagactctaatgggctacagagtcacatccttcctaa 305

                                                                       
Query: 539 aggggtaaaggcacagagttcccaaagatgtacagctaagcaactcgcaatagcacagca 598
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aggggtaaagacacagagttcccaaagatgtacagctaagcaactcgcaatagcacagca 245

                                                       
Query: 599 ctgggtagctgcagtctctccaggcacctctctcatctcttagg 642
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctgggtagctgcagtctctccaggcacctctctcatctcttagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1038
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1028
Effective search space:   649696
Effective search space used:   649696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)