BAC Information

Click to search

BAC

Clone NameMSMg01-453C02
Chromosome13 (Build37)
Map Location 23,099,808 - 23,100,475
singlet/doubletsinglet
Overlap genenone
Upstream genePrss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18
Downstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453C02.T7 (MSMg01no453_c02.b1)MSMg01-453C02.TJ (MSMg01no453_c02.g1)
ACCAG540218AG540219
length749748
length of high quality
(start - end)		678 (46 - 723)603 (81 - 683)
definitionCHROMAT_FILE: MSMg01no453_c02.b1 PHD_FILE: MSMg01no453_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:54 2005CHROMAT_FILE: MSMg01no453_c02.g1 PHD_FILE: MSMg01no453_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TCCGCGGAATTCTTAAGATGGTAAAGGTTACTCTAATGGCTTATACTTCT
GCACAGGCACCAGGCATACAATGACTGAAGCTGAGATTAGTATTATAATA
TTATTTGATAAAATCAAGAGATTATAATAATGGATACAGAAGAAAAAGCT
TTAAATTAGGAATTCAAAGTTATGATTATATAAAATGTGCAAATATTTGA
AAGGTGGAAATGCATAAAAGCAAACATATTCAAATTTTACAAACACAAGT
GACACTTTTGGAGTCACAGTGCTGGTTTGTTTTTCTTTTGTCTTGTTTGC
TCAAAGACAGAATCTCCCTACATTAACCAGGCTAGCTTTGAACAACTTTC
TTGGCTCAGTCTCTCTAGGCTTGATTTTACAGGAGTGTATCCTTAGGCTT
TTCTTAAAAATTTGATGCACATCTTCTCCATCTTACTGACTTTTGAAAAA
AAATGTGAAAGAAATGTTAGACAATGCCCCACCCAAAGCTCTGTGCTGAC
TCCAGCCTGAGGATGGACAGCAACACCTCAGCACTTCTGTCCTATTTCTG
TATCTCCGAAAACTCATCTCCTTTGAATTTTCTGGACCAAGAGACCAACC
TTGTCAGGGTCAGAAGGAAAGTGAAGGACACAAGACTCACAGAGCCTCTC
AACCCCTCTCTGGCTTAATCAGAGAGAGATTTCAGCTTTAATGACTCTC

NCCTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTG
ATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAA
TTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_c02.b1 MSMg01no453_c02.b1 CHROMAT_FILE:
MSMg01no453_c02.b1 PHD_FILE: MSMg01no453_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:54 2005
         (678 letters)



>mm_chr13_23099597_23100675
          Length = 1079

 Score = 1261 bits (652), Expect = 0.0
 Identities = 664/668 (99%), Gaps = 1/668 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattcttaagatggtaaaggttactctaatggcttatacttctgcacaggcaccaggca 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gaattcttaagatggtaaaggttactctaatggcttatacttctgcacaggcaccaggca 820

                                                                       
Query: 72  tacaatgactgaagctgagattagtattataatattatttgataaaatcaagagattata 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tacaatgactgaagctgagattagtattataatattatttgataaaatcaagagattata 760

                                                                       
Query: 132 ataatggatacagaagaaaaagctttaaattaggaattcaaagttatgattatataaaat 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ataatggatacagaagaaaaagctttaaattaggaattcaaagttatgattatataaaat 700

                                                                       
Query: 192 gtgcaaatatttgaaaggtggaaatgcataaaagcaaacatattcaaattttacaaacac 251
           ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 699 gtgcaaatatttgaaaggtggaaatgcataaaagccaacatatttaaattttacaaacac 640

                                                                       
Query: 252 aagtgacacttttggagtcacagtgctggtttgtttttcttttgtcttgtttgctcaaag 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aagtgacacttttggagtcacagtgctggtttgtttttcttttgtcttgtttgctcaaag 580

                                                                       
Query: 312 acagaatctccctacattaaccaggctagctttgaacaactttcttggctcagtctctct 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 acagaatctccctacattaaccaggctagctttgaacaactttcttggctcagtctctct 520

                                                                       
Query: 372 aggcttgattttacaggagtgtatccttaggcttttcttaaaaatttgatgcacatcttc 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aggcttgattttacaggagtgtatccttaggcttttcttaaaaatttgatgcacatcttc 460

                                                                       
Query: 432 tccatcttactgacttttg-aaaaaaaatgtgaaagaaatgttagacaatgccccaccca 490
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tccatcttactgacttttgaaaaaaaaatgtgaaagaaatgttagacaatgccccaccca 400

                                                                       
Query: 491 aagctctgtgctgactccagcctgaggatggacagcaacacctcagcacttctgtcctat 550
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 399 aagctctgtgctgactccagcctgaggatggacagcaacgcctcagcacttctgtcctat 340

                                                                       
Query: 551 ttctgtatctccgaaaactcatctcctttgaattttctggaccaagagaccaaccttgtc 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttctgtatctccgaaaactcatctcctttgaattttctggaccaagagaccaaccttgtc 280

                                                                       
Query: 611 agggtcagaaggaaagtgaaggacacaagactcacagagcctctcaacccctctctggct 670
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agggtcagaaggaaagtgaaggacacaagactcacagagcctctcaacccctctctggct 220

                   
Query: 671 taatcaga 678
           ||||||||
Sbjct: 219 taatcaga 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1079
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1069
Effective search space:   714092
Effective search space used:   714092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |