BAC Information

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BAC

Clone NameMSMg01-453L07
Chromosome13 (Build37)
Map Location 89,811,419 - 89,969,527
singlet/doubletdoublet
Overlap geneVcan, LOC100042940
Upstream geneEdil3, Hapln1, EG667266
Downstream geneXrcc4, Tmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453L07.T7 (MSMg01no453_l07.b1)MSMg01-453L07.TJ (MSMg01no453_l07.g1)
ACCAG540655AG540656
length756769
length of high quality
(start - end)		682 (51 - 732)152 (81 - 232)
definitionCHROMAT_FILE: MSMg01no453_l07.b1 PHD_FILE: MSMg01no453_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:40 2005CHROMAT_FILE: MSMg01no453_l07.g1 PHD_FILE: MSMg01no453_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:40 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(89,969,002 - 89,969,527)(89,811,419 - 89,811,570)
sequence
NTTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATAGCCACTCTGTATAGAATGTCCCTCTTCACTGCCTAT
AACAAAGCTAGTCTCAGTGCCCTGATTAGTAATGTTTTTCATTCCAAGTA
TCTGAAACTGCCATTCTAAATTGGATGTTTATTTATTTTTAACCATAGTT
TCCTATAAATGTGGTCAGAACAGGAATTTAGTGTGGTCCACTCTCCCTAT
AACCTCTGTCTAGTGCAATGTACAATAGATGATCAGTGAATATTTTAATT
ATTTCAATGTGTCATTACAACGATACAAAAGCAGTAATATATAAAAAAGT
ATATGATATAATTTATTGATTTGCCTCAGTGACATTTTTCTAGAATAAAC
CATTTACTCTCTATAAATCAAACTTGAAAGACTGAGTGTGAGCACATCTT
ATGTATAAGCCCCAGCAGGGCAAGGCTATGGTTGAAATCTTTACATTGAA
AGTTTCAAGATAAACACTTCCTCCTTCAGCCTATGTGAATGGTAGTTTCT
TTCCTCTGTCATCCTGTCCTGGTCATTGTTTATGATTTTAACTAAGCCAC
CTGGTTGGGGTCTTAGGTTTCTGTCCCTCTCTTGGCTCCCTTCTCTGTCA
TCTTAGACTGTGTGCTCTTGAGTTGTTGCACCCAAACAGAAGTTCATGCC
CCAAATGCCCACACTATGAACAAAGCCCAGCTGGGACAAGGATGTTTTTA
AGTTTN

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTCAGCTCCTTTCTTA
ATTTCTGGACAACAACATTCCAAAGAGACATTTCCTTTGAAGTAGTTTCA
TCCAAGCCTCTGATGGGTAGATGCTACTGAGGATGGGAGTGGTGATGGGG
GCAAGAGGGATGGTGGAGGGTGGAGAGGGAGGNATATNTGACTAACCNCT
GTGAAATTAATGCATACTCTGGAAAGTCCTATTCTCTTATTAGAACATTA
TTCCTGGGATGTTAAAGAAAAATAAACACAAATAAATATGGTAGCAGTCT
TAAATCTACTATCCTAAGCTTAAATTCTAATCCCTTGTCGGTGAATCCCG
TTGTGTTATCTTTTAATATATTCCCCCCCCTTGAGATGAAATTATAGTTA
TATTTTTTAACTTGCCTATTTTCCTGTCACATCTATGATTCTAATAATAT
TAAGAGGTCATGATTTACCTTCATGAGTTACCAACCCATCTGTTTCTTTT
CCTCCTGTGCTTGTACTCCTTTCTTTTTAATATGATAAATTAGAATTACC
CCCCGCCCACATTTTTTTTCTTTCCTCCCTGGAATTTTGCTACGCCCTAC
TTGTGCCCTTTTTGATAAATGTTCTTGGAACCCTTCCAAAATCGACTTGC
TTCCTGAACTTTTCTTATGACTCCATTTTTGTTTTGCTCTTGGGCTACCT
CCTGTAACCTTCATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_l07.b1 MSMg01no453_l07.b1 CHROMAT_FILE:
MSMg01no453_l07.b1 PHD_FILE: MSMg01no453_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:40 2005
         (682 letters)



>mm_chr13_89968648_89969729
          Length = 1082

 Score =  955 bits (494), Expect = 0.0
 Identities = 518/526 (98%)
 Strand = Plus / Minus

                                                                       
Query: 155 ataaatgtggtcagaacaggaatttagtgtggtccactctccctataacctctgtctagt 214
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 880 ataaatgtggtcagaacagggatttagtgtggtccactctccctatagcctctgtctagt 821

                                                                       
Query: 215 gcaatgtacaatagatgatcagtgaatattttaattatttcaatgtgtcattacaacgat 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 820 gcaatgtacaatagatgatcagtgaatattttaattatttcaatgtgtcattacaactat 761

                                                                       
Query: 275 acaaaagcagtaatatataaaaaagtatatgatataatttattgatttgcctcagtgaca 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 acaaaagcagtaatatataaaaaagtatatgatataatttattgatttgcctcagtgaca 701

                                                                       
Query: 335 tttttctagaataaaccatttactctctataaatcaaacttgaaagactgagtgtgagca 394
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 700 tttttctagaataaaccatttactctctgtaaatcaaacttgaaagactgagtgtgagca 641

                                                                       
Query: 395 catcttatgtataagccccagcagggcaaggctatggttgaaatctttacattgaaagtt 454
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 640 catcttatgtataagccccagcagggcaaggctgtggttgaaatctttacattgaaagtt 581

                                                                       
Query: 455 tcaagataaacacttcctccttcagcctatgtgaatggtagtttctttcctctgtcatcc 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tcaagataaacacttcctccttcagcctatgtgaatggtagtttctttcctctgtcatcc 521

                                                                       
Query: 515 tgtcctggtcattgtttatgattttaactaagccacctggttggggtcttaggtttctgt 574
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 520 tgtcctggtcattgtttatgatttcaactaagccacctggttggggtcttaggcttctgt 461

                                                                       
Query: 575 ccctctcttggctcccttctctgtcatcttagactgtgtgctcttgagttgttgcaccca 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ccctctcttggctcccttctctgtcatcttagactgtgtgctcttgagttgttgcaccca 401

                                                         
Query: 635 aacagaagttcatgccccaaatgcccacactatgaacaaagcccag 680
           ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 400 aacagaagttcatgccccaaatgcccacactgtgaacaaagcccag 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_l07.g1 MSMg01no453_l07.g1 CHROMAT_FILE:
MSMg01no453_l07.g1 PHD_FILE: MSMg01no453_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:40 2005
         (152 letters)



>mm_chr13_89811219_89811770
          Length = 552

 Score =  255 bits (132), Expect = 7e-73
 Identities = 147/152 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagttcagctcctttcttaatttctggacaacaacattccaaagagacatttcctttga 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagttcagctccttgcttaatttctggacaacaacattccaaagagacatttcctttga 260

                                                                       
Query: 61  agtagtttcatccaagcctctgatgggtagatgctactgaggatgggagtggtgatgggg 120
           | ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 261 aatagtttcgtccaagcctctgatgagtagatgctactgaggatgggggtggtgatgggg 320

                                           
Query: 121 gcaagagggatggtggagggtggagagggagg 152
           ||||||||||||||||||||||||||||||||
Sbjct: 321 gcaagagggatggtggagggtggagagggagg 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 552
Length adjustment: 8
Effective length of query: 144
Effective length of database: 544
Effective search space:    78336
Effective search space used:    78336
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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