BAC Information

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BAC

Clone NameMSMg01-453N08
Chromosome13 (Build37)
Map Location 26,184,624 - 26,340,089
singlet/doubletdoublet
Overlap geneLOC666221
Upstream geneDcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453N08.T7 (MSMg01no453_n08.b1)MSMg01-453N08.TJ (MSMg01no453_n08.g1)
ACCAG540753AG540754
length762760
length of high quality
(start - end)		631 (54 - 684)600 (83 - 682)
definitionCHROMAT_FILE: MSMg01no453_n08.b1 PHD_FILE: MSMg01no453_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:50 2005CHROMAT_FILE: MSMg01no453_n08.g1 PHD_FILE: MSMg01no453_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,339,463 - 26,340,089)(26,184,624 - 26,185,221)
sequence
TTTTTCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAATAATTCAGCAGTAAAATAAAACATTCAAGGGAAAA
TTTACTCAACACACAGATTGTTGTTTTCATCTATGAAAGCAGATCATGAG
GCCCCATTAATCCACTGTTGCCTTGTCATCTAGAGTAGGGCTTTCCAAGT
GACACTCTGTTACTTGTCTGTTCTTTATTAACAAAACAGAGTTATTTATT
CATTAAGGAAAAGTATAAAGTAATAGATCATTAAATAAAGACACTGTTTG
TTTCATTTAGTCTGTGATTATTATAGACATCCTGTGAAATATTCTATATT
CAAGACATAAACTTTAACAAGAAAATGCTATGTATTCAATAGGTTAATGA
TTTTAGAAAGAGACAGGTACATGTTCTAAGCAAGGACTGTTATGGTCAGA
GGTCAGACAGGGTAAGTGGGCAGCAGTATACATGGTGTAGATTCTGAGGA
CTTTATGTGTGGCTTGCTTCTGTAGAAAGTGCCATACACTTTACTATAGT
TATCCCACAACCATCTTGGCCTTGTACAGAAGCCCATAAAGCAATTTCAT
CCAAATAATCTAAGTTTTCTTTGTAATTTAGCATCTCATGAAAAATCATT
GGTGCTGTGTATACTTAACTGTAGATTTTGGCGTCAACATTTTCTTAAAA
TTTTCACAGATCCTTGTGCCATCAACAGGAAGCCTTGATCTCGAGCGTCA
CTTTTCTATGTC

TATTTCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTGTTGAATAATCAC
TCCATTTTGCATTTATTACAATGTAAGGTTCCTAAAATCACATATATCTG
TCTGATTGTCTCTCTGCCTGCCTTCTTGCCTGTCATTCTATTTATCTATC
CATCTTTCTTTCACTCATAAATACACCTTTCTTTTTCCATTTCTTCCTCT
CTCCTCCTTGTTTCTTTTCTTTCTAACTTCCTTATTACGCTCCCTCCCCA
TGTTTTTCCCCTTTATGTGTTACATATGTGGGCATCTTAAAACTGAATTC
TTCACATATTTAAATCTTATCATCTATTTATTCTATGATGATGTAATACT
GAGGTTGTTTAGATCTGTGGGATATACCCCAAATAATTGTTGTTCTCTCA
TATGCCTTATACCAAGCAGAATCAAGCCTCTACATACCAAATGGGTCTAG
AAAACATGTTTTTAAACTAGAACTTGAAGGATGCTCTTAAATATTATTTT
TCAAATGACCTCATAAAAATATCAAAAATAAATGATCATCACACAGTGTT
TATGACACATTTTCATCAAACAATAATCATCACCCAGTGGCCATCGTTCA
ATGGTCATCACAAAGTGATCATCATACAGTGTTTATACAAAAATGATTTT
ATTGAAGATTCTANGTAACAGGCAGGGGATAGAGTCAAAGCAGTTAAGAC
AGACAGGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_n08.b1 MSMg01no453_n08.b1 CHROMAT_FILE:
MSMg01no453_n08.b1 PHD_FILE: MSMg01no453_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:50 2005
         (631 letters)



>mm_chr13_26339259_26340289
          Length = 1031

 Score = 1174 bits (607), Expect = 0.0
 Identities = 622/627 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaataattcagcagtaaaataaaacattcaagggaaaatttactcaacacacaga 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gaattcaataactcagcagtaaaataaaacattcaagggaaaatttactcaacacacaga 772

                                                                       
Query: 65  ttgttgttttcatctatgaaagcagatcatgaggccccattaatccactgttgccttgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 771 ttgttgttttcatctatgaaagcagatcatgaggccccattaatccactgttgccatgtc 712

                                                                       
Query: 125 atctagagtagggctttccaagtgacactctgttacttgtctgttctttattaacaaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 atctagagtagggctttccaagtgacactctgttacttgtctgttctttattaacaaaac 652

                                                                       
Query: 185 agagttatttattcattaaggaaaagtataaagtaatagatcattaaataaagacactgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agagttatttattcattaaggaaaagtataaagtaatagatcattaaataaagacactgt 592

                                                                       
Query: 245 ttgtttcatttagtctgtgattattatagacatcctgtgaaatattctatattcaagaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttgtttcatttagtctgtgattattatagacatcctgtgaaatattctatattcaagaca 532

                                                                       
Query: 305 taaactttaacaagaaaatgctatgtattcaataggttaatgattttagaaagagacagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 taaactttaacaagaaaatgctatgtattcaataggttaatgattttagaaagagacagg 472

                                                                       
Query: 365 tacatgttctaagcaaggactgttatggtcagaggtcagacagggtaagtgggcagcagt 424
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 471 tacatgttctaagcaaggactgttatggtcagaggtcagacagagtaagtgggcagcagt 412

                                                                       
Query: 425 atacatggtgtagattctgaggactttatgtgtggcttgcttctgtagaaagtgccatac 484
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 411 atacatggtgtagattctgaggactttatctgtggcttgcttctgtagaaagtgccatac 352

                                                                       
Query: 485 actttactatagttatcccacaaccatcttggccttgtacagaagcccataaagcaattt 544
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 351 actttactatagttatcccacaaccatcctggccttgtacagaagcccataaagcaattt 292

                                                                       
Query: 545 catccaaataatctaagttttctttgtaatttagcatctcatgaaaaatcattggtgctg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 catccaaataatctaagttttctttgtaatttagcatctcatgaaaaatcattggtgctg 232

                                      
Query: 605 tgtatacttaactgtagattttggcgt 631
           |||||||||||||||||||||||||||
Sbjct: 231 tgtatacttaactgtagattttggcgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_n08.g1 MSMg01no453_n08.g1 CHROMAT_FILE:
MSMg01no453_n08.g1 PHD_FILE: MSMg01no453_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:50 2005
         (600 letters)



>mm_chr13_26184424_26185423
          Length = 1000

 Score = 1102 bits (570), Expect = 0.0
 Identities = 591/598 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtgttgaataatcactccattttgcatttattacaatgtaaggttcctaaaatcaca 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtgttgcataatcactccattttgcatttattacaatgtaaggttcctaaaatcaca 260

                                                                       
Query: 61  tatatctgtctgattgtctctctgcctgccttcttgcctgtcattctatttatctatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatatctgtctgattgtctctctgcctgccttcttgcctgtcattctatttatctatcca 320

                                                                       
Query: 121 tctttctttcactcataaatacacctttctttttccatttcttcctctctcctccttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 321 tctttctttcactcataaatacacctttctttttccatttcttcctctctcttccttctt 380

                                                                       
Query: 181 tcttttctttctaacttccttattacgctccctccccatgtttttcccctttatgtgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttttctttctaacttccttattacgctccctccccatgtttttcccctttatgtgtta 440

                                                                       
Query: 241 catatgtgggcatcttaaaactgaattcttcacatatttaaatcttatcatctatttatt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catatgtggacatcttaaaactgaattcttcacatatttaaatcttatcatctatttatt 500

                                                                       
Query: 301 ctatgatgatgtaatactgaggttgtttagatctgtgggatataccccaaataattgttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatgatgatgtaatactgaggttgtttagatctgtgggatataccccaaataattgttg 560

                                                                       
Query: 361 ttctctcatatgccttataccaagcagaatcaagcctctacataccaaatgggtctagaa 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 ttctctcatatgccttataccaagcagaatcaagcctctacatagcaaatgggtctagaa 620

                                                                       
Query: 421 aacatgtttttaaactagaacttgaaggatgctcttaaatattatttttcaaatgacctc 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 aacatgtttttaaactagaacttgaaggatgttcttaaatattatttttcaaatgacctc 680

                                                                       
Query: 481 ataaaaatatcaaaaataaatgatcatcacacagtgtttatgacacattttcatcaaaca 540
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataaaaatataaaaaataaatgatcatcacacagtgtttatgacacattttcatcaaaca 740

                                                                     
Query: 541 ataatcatcacccagtggccatcgttcaatggtcatcacaaagtgatcatcatacagt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataatcatcacccagtggccatcgttcaatggtcatcacaaagtgatcatcatacagt 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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